miRNA display CGI


Results 121 - 140 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 3' -53.9 NC_006151.1 + 82380 0.67 0.923288
Target:  5'- ---cGGGCGCGucGAAGgccacgaGCUCCGCGc -3'
miRNA:   3'- cgcaCCUGUGCuuCUUCg------CGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 51165 0.67 0.923288
Target:  5'- cGCGgugaUGGugACGugcAGGGccCGCUCCACGa -3'
miRNA:   3'- -CGC----ACCugUGC---UUCUucGCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 123036 0.67 0.938793
Target:  5'- gGCGUGGGCGgaccUGccGGccgcGGCGCUgCGCGa -3'
miRNA:   3'- -CGCACCUGU----GCuuCU----UCGCGAgGUGC- -5'
29381 3' -53.9 NC_006151.1 + 57196 0.67 0.943476
Target:  5'- uCGUGG-CGCGAGGcgaAGGCccGCUCgACGa -3'
miRNA:   3'- cGCACCuGUGCUUC---UUCG--CGAGgUGC- -5'
29381 3' -53.9 NC_006151.1 + 120377 0.67 0.943476
Target:  5'- aGCGcccGGACACGGccguGGAcGUGCUCaACGg -3'
miRNA:   3'- -CGCa--CCUGUGCU----UCUuCGCGAGgUGC- -5'
29381 3' -53.9 NC_006151.1 + 85297 0.66 0.947919
Target:  5'- cGCGUGc-CGCGc--GAGCaGCUCCACGg -3'
miRNA:   3'- -CGCACcuGUGCuucUUCG-CGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 63522 0.66 0.947919
Target:  5'- cGCG-GGGCGguCGggGAAGaCGCcggcgaCCACGu -3'
miRNA:   3'- -CGCaCCUGU--GCuuCUUC-GCGa-----GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 56237 0.66 0.947919
Target:  5'- cCGaGGACccgACGGAGuucGCGCUCUGCGu -3'
miRNA:   3'- cGCaCCUG---UGCUUCuu-CGCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 117423 0.66 0.947919
Target:  5'- aGCGUGacCACcgugccguuGggGAAGCGCgggUCCGCGc -3'
miRNA:   3'- -CGCACcuGUG---------CuuCUUCGCG---AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 85153 0.66 0.947919
Target:  5'- cGCGUGcGGCAgGggGccggcgccgcGGGCGCcgCCGCc -3'
miRNA:   3'- -CGCAC-CUGUgCuuC----------UUCGCGa-GGUGc -5'
29381 3' -53.9 NC_006151.1 + 70168 0.66 0.947919
Target:  5'- aGCGcGGGCGCGAAGc-GCGUcaUCUGCu -3'
miRNA:   3'- -CGCaCCUGUGCUUCuuCGCG--AGGUGc -5'
29381 3' -53.9 NC_006151.1 + 82226 0.66 0.947919
Target:  5'- ---aGcGGCAgGAAGGAGCGCagCGCGa -3'
miRNA:   3'- cgcaC-CUGUgCUUCUUCGCGagGUGC- -5'
29381 3' -53.9 NC_006151.1 + 17373 0.67 0.945282
Target:  5'- cCGUGGggucggaccguguccGCACGAcGggGCGCguggCgCGCGg -3'
miRNA:   3'- cGCACC---------------UGUGCUuCuuCGCGa---G-GUGC- -5'
29381 3' -53.9 NC_006151.1 + 130384 0.67 0.943476
Target:  5'- gGCGUccaGCGCGAAGGccAGCGCcucgcCCGCGa -3'
miRNA:   3'- -CGCAcc-UGUGCUUCU--UCGCGa----GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 117495 0.67 0.943476
Target:  5'- aCGUGGAaGCGcucGAAGCGCggacUCACGg -3'
miRNA:   3'- cGCACCUgUGCuu-CUUCGCGa---GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 108482 0.67 0.943476
Target:  5'- aGCG-GGGCGCGcAGAcaAGUGCgaacaCACGg -3'
miRNA:   3'- -CGCaCCUGUGCuUCU--UCGCGag---GUGC- -5'
29381 3' -53.9 NC_006151.1 + 104365 0.67 0.943476
Target:  5'- gGCGccGACACGGAGc--CGCUCuCGCGg -3'
miRNA:   3'- -CGCacCUGUGCUUCuucGCGAG-GUGC- -5'
29381 3' -53.9 NC_006151.1 + 102946 0.67 0.943476
Target:  5'- cGCGcUGGACGCGgcGcccGcCGC-CCACGa -3'
miRNA:   3'- -CGC-ACCUGUGCuuCuu-C-GCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 64541 0.67 0.943476
Target:  5'- cGCGUcGGGgGCGgcGAGGCcguggcgcgccaGCUCgACGa -3'
miRNA:   3'- -CGCA-CCUgUGCuuCUUCG------------CGAGgUGC- -5'
29381 3' -53.9 NC_006151.1 + 7159 0.67 0.943476
Target:  5'- cGCGcGGGCGCGAGGc-GCauGCUCgGCa -3'
miRNA:   3'- -CGCaCCUGUGCUUCuuCG--CGAGgUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.