Results 41 - 60 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29381 | 3' | -53.9 | NC_006151.1 | + | 17273 | 0.66 | 0.966647 |
Target: 5'- cGCGgGGGCGggcUGAuacGGAGGgGCUCCcCGg -3' miRNA: 3'- -CGCaCCUGU---GCU---UCUUCgCGAGGuGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 52374 | 0.66 | 0.966647 |
Target: 5'- cGCGcccccgGGGCccGCGggGGcggcgGGCGCcgCCGCGc -3' miRNA: 3'- -CGCa-----CCUG--UGCuuCU-----UCGCGa-GGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 142107 | 0.66 | 0.966647 |
Target: 5'- uGCGcGGGCugGguGAAGCcCaCCGCGa -3' miRNA: 3'- -CGCaCCUGugCuuCUUCGcGaGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 30896 | 0.66 | 0.966647 |
Target: 5'- gGCGagcGGAgCGCGcGGuAGCGC-CCGCGg -3' miRNA: 3'- -CGCa--CCU-GUGCuUCuUCGCGaGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 33096 | 0.66 | 0.966647 |
Target: 5'- gGCGguggaggggGGAgAgGAAGGucugGGCGCgugCCGCGg -3' miRNA: 3'- -CGCa--------CCUgUgCUUCU----UCGCGa--GGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 73040 | 0.66 | 0.959836 |
Target: 5'- gGCgGUGG-CGCGGuGGggGUGCgcggggUCCGCGu -3' miRNA: 3'- -CG-CACCuGUGCU-UCuuCGCG------AGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 2485 | 0.66 | 0.959836 |
Target: 5'- cGCGcGGuGCcCGAAGGcGGCGC-CCGCGu -3' miRNA: 3'- -CGCaCC-UGuGCUUCU-UCGCGaGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 33981 | 0.66 | 0.952124 |
Target: 5'- cGCGgGGACAcucuuuccccCGGAGggGCGUcCCGgCGc -3' miRNA: 3'- -CGCaCCUGU----------GCUUCuuCGCGaGGU-GC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 77225 | 0.66 | 0.952124 |
Target: 5'- cGCGUGuGuGCGCcGGGAGGCGCcCCcCGg -3' miRNA: 3'- -CGCAC-C-UGUGcUUCUUCGCGaGGuGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 45183 | 0.66 | 0.952124 |
Target: 5'- gGCGUgcccgccaccacGGACgGCGAcGggGUGCgCCGCGc -3' miRNA: 3'- -CGCA------------CCUG-UGCUuCuuCGCGaGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 35172 | 0.66 | 0.956095 |
Target: 5'- aGCGggccGGGCAUGcaaaucAGAGGCGCgcgggagacgccUCCGCGc -3' miRNA: 3'- -CGCa---CCUGUGCu-----UCUUCGCG------------AGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 103651 | 0.66 | 0.956095 |
Target: 5'- gGCGgacgcGGACACGGcggAGAaggcGGCGCgcgCgGCGg -3' miRNA: 3'- -CGCa----CCUGUGCU---UCU----UCGCGa--GgUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 5053 | 0.66 | 0.956095 |
Target: 5'- gGCGgaggaGGAgGCGGAGGAGgccgagggcCGCggggCCGCGg -3' miRNA: 3'- -CGCa----CCUgUGCUUCUUC---------GCGa---GGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 10101 | 0.66 | 0.956095 |
Target: 5'- gGCG-GGuGCGgagGAGGAAGCGCUCgCGCc -3' miRNA: 3'- -CGCaCC-UGUg--CUUCUUCGCGAG-GUGc -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 58797 | 0.66 | 0.956095 |
Target: 5'- aCGUGGAC-----GAAGCGCgCCGCGu -3' miRNA: 3'- cGCACCUGugcuuCUUCGCGaGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 90654 | 0.66 | 0.956095 |
Target: 5'- gGCGUGuacauGCGCGggGcGGCGggCCGCu -3' miRNA: 3'- -CGCACc----UGUGCuuCuUCGCgaGGUGc -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 96765 | 0.66 | 0.956095 |
Target: 5'- gGCGUGugcucGACACGggGAGGUGa---GCGg -3' miRNA: 3'- -CGCAC-----CUGUGCuuCUUCGCgaggUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 88826 | 0.66 | 0.958738 |
Target: 5'- gGCGagGGAgGCGuuggcggagcugaaGAGGAGcCGCUcCCGCGg -3' miRNA: 3'- -CGCa-CCUgUGC--------------UUCUUC-GCGA-GGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 4217 | 0.66 | 0.959836 |
Target: 5'- gGCGgccgGGGCGCGGGcGGGCGCgggcagCCggaGCGg -3' miRNA: 3'- -CGCa---CCUGUGCUUcUUCGCGa-----GG---UGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 20525 | 0.66 | 0.959836 |
Target: 5'- gGCGUGGugaACACGgcGuccucGGCGgggUCCACGa -3' miRNA: 3'- -CGCACC---UGUGCuuCu----UCGCg--AGGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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