Results 61 - 80 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29381 | 3' | -53.9 | NC_006151.1 | + | 96765 | 0.66 | 0.956095 |
Target: 5'- gGCGUGugcucGACACGggGAGGUGa---GCGg -3' miRNA: 3'- -CGCAC-----CUGUGCuuCUUCGCgaggUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 90654 | 0.66 | 0.956095 |
Target: 5'- gGCGUGuacauGCGCGggGcGGCGggCCGCu -3' miRNA: 3'- -CGCACc----UGUGCuuCuUCGCgaGGUGc -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 88126 | 0.66 | 0.952124 |
Target: 5'- aGCGggcGGGCGCuccgcacguuGAGcaggccGggGUGCUCCGCGc -3' miRNA: 3'- -CGCa--CCUGUG----------CUU------CuuCGCGAGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 3931 | 0.66 | 0.952124 |
Target: 5'- aGCGgGGGCAgGccGGgcGCggGCUCCGCGg -3' miRNA: 3'- -CGCaCCUGUgCu-UCuuCG--CGAGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 94572 | 0.66 | 0.951714 |
Target: 5'- --aUGGACugGcugugguccacaaAGGggGCGCggUCCGCGc -3' miRNA: 3'- cgcACCUGugC-------------UUCuuCGCG--AGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 133985 | 0.66 | 0.947919 |
Target: 5'- -gGUGGAgACGAuggaAGAgAGCGCgggggCCACc -3' miRNA: 3'- cgCACCUgUGCU----UCU-UCGCGa----GGUGc -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 99441 | 0.66 | 0.947919 |
Target: 5'- uCGcGGACACGcuGGAGCccCUCUACGg -3' miRNA: 3'- cGCaCCUGUGCuuCUUCGc-GAGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 85297 | 0.66 | 0.947919 |
Target: 5'- cGCGUGc-CGCGc--GAGCaGCUCCACGg -3' miRNA: 3'- -CGCACcuGUGCuucUUCG-CGAGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 63522 | 0.66 | 0.947919 |
Target: 5'- cGCG-GGGCGguCGggGAAGaCGCcggcgaCCACGu -3' miRNA: 3'- -CGCaCCUGU--GCuuCUUC-GCGa-----GGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 56237 | 0.66 | 0.947919 |
Target: 5'- cCGaGGACccgACGGAGuucGCGCUCUGCGu -3' miRNA: 3'- cGCaCCUG---UGCUUCuu-CGCGAGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 101223 | 0.66 | 0.952124 |
Target: 5'- gGCGUGGACggggcccgGCGggGGcauGUGCgCCAUc -3' miRNA: 3'- -CGCACCUG--------UGCuuCUu--CGCGaGGUGc -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 122958 | 0.66 | 0.952124 |
Target: 5'- cGCGggGGGCGCGGacgccggcgacGGggGCG-UCgGCGa -3' miRNA: 3'- -CGCa-CCUGUGCU-----------UCuuCGCgAGgUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 58797 | 0.66 | 0.956095 |
Target: 5'- aCGUGGAC-----GAAGCGCgCCGCGu -3' miRNA: 3'- cGCACCUGugcuuCUUCGCGaGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 10101 | 0.66 | 0.956095 |
Target: 5'- gGCG-GGuGCGgagGAGGAAGCGCUCgCGCc -3' miRNA: 3'- -CGCaCC-UGUg--CUUCUUCGCGAG-GUGc -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 5053 | 0.66 | 0.956095 |
Target: 5'- gGCGgaggaGGAgGCGGAGGAGgccgagggcCGCggggCCGCGg -3' miRNA: 3'- -CGCa----CCUgUGCUUCUUC---------GCGa---GGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 103651 | 0.66 | 0.956095 |
Target: 5'- gGCGgacgcGGACACGGcggAGAaggcGGCGCgcgCgGCGg -3' miRNA: 3'- -CGCa----CCUGUGCU---UCU----UCGCGa--GgUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 35172 | 0.66 | 0.956095 |
Target: 5'- aGCGggccGGGCAUGcaaaucAGAGGCGCgcgggagacgccUCCGCGc -3' miRNA: 3'- -CGCa---CCUGUGCu-----UCUUCGCG------------AGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 45183 | 0.66 | 0.952124 |
Target: 5'- gGCGUgcccgccaccacGGACgGCGAcGggGUGCgCCGCGc -3' miRNA: 3'- -CGCA------------CCUG-UGCUuCuuCGCGaGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 77225 | 0.66 | 0.952124 |
Target: 5'- cGCGUGuGuGCGCcGGGAGGCGCcCCcCGg -3' miRNA: 3'- -CGCAC-C-UGUGcUUCUUCGCGaGGuGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 33981 | 0.66 | 0.952124 |
Target: 5'- cGCGgGGACAcucuuuccccCGGAGggGCGUcCCGgCGc -3' miRNA: 3'- -CGCaCCUGU----------GCUUCuuCGCGaGGU-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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