miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 5' -61.8 NC_006151.1 + 58315 0.66 0.628869
Target:  5'- gGCGUuucaGcGGCGGCgcgCCggCCUCCGCguaGGCg -3'
miRNA:   3'- aUGCG----C-CCGUCGa--GGa-GGAGGUG---CCG- -5'
29381 5' -61.8 NC_006151.1 + 138906 0.66 0.63882
Target:  5'- cUACGCGGcgaGCGuGCUCg-CCgCCACGGUc -3'
miRNA:   3'- -AUGCGCC---CGU-CGAGgaGGaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 44183 0.66 0.63882
Target:  5'- -cCGCGGGUcGC-CgUCCgggCgGCGGCg -3'
miRNA:   3'- auGCGCCCGuCGaGgAGGa--GgUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 33899 0.66 0.63882
Target:  5'- gGCGgGGGCcucGCgCCUCCgcgUC-CGGCg -3'
miRNA:   3'- aUGCgCCCGu--CGaGGAGGa--GGuGCCG- -5'
29381 5' -61.8 NC_006151.1 + 132715 0.66 0.628869
Target:  5'- uUGC-CGGGCAgGCacgagaaaggUCCUCguuccagcgCUCCAUGGCg -3'
miRNA:   3'- -AUGcGCCCGU-CG----------AGGAG---------GAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 37150 0.66 0.628869
Target:  5'- cGCGcCGGGCcGCcaCCgUCUCCGcCGGCg -3'
miRNA:   3'- aUGC-GCCCGuCGa-GGaGGAGGU-GCCG- -5'
29381 5' -61.8 NC_006151.1 + 2327 0.66 0.628869
Target:  5'- aGCG-GGGCGGcCUCggcgucgggCUCCagcagcgCCGCGGCg -3'
miRNA:   3'- aUGCgCCCGUC-GAG---------GAGGa------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 131106 0.66 0.628869
Target:  5'- --gGCGGGgGGC-CCgg--CCGCGGCg -3'
miRNA:   3'- augCGCCCgUCGaGGaggaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 76001 0.66 0.628869
Target:  5'- cACGCGGcGCuucAGCUCCgacaCgagCGCGGCg -3'
miRNA:   3'- aUGCGCC-CG---UCGAGGag--Gag-GUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 25409 0.66 0.645784
Target:  5'- gACGgGGGCGccgccgccccacgcGCgcccgucaucCCUCC-CCGCGGCc -3'
miRNA:   3'- aUGCgCCCGU--------------CGa---------GGAGGaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 4052 0.66 0.645784
Target:  5'- gGCGCGGGCcccguccacgcuguAGCgcaCCagCggcgCCACGGUg -3'
miRNA:   3'- aUGCGCCCG--------------UCGa--GGagGa---GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 30920 0.66 0.648767
Target:  5'- -cCGCGGGCGGC-CCgcgcggaucgCC-CgCGCGGUa -3'
miRNA:   3'- auGCGCCCGUCGaGGa---------GGaG-GUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 69717 0.66 0.649761
Target:  5'- -cCGgGGGCAGCagcgcgucgauguggCC-CC-CCGCGGCc -3'
miRNA:   3'- auGCgCCCGUCGa--------------GGaGGaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 101865 0.66 0.648767
Target:  5'- --gGCGGcGCAccGCUCCcgCCgccgCCGCGGg -3'
miRNA:   3'- augCGCC-CGU--CGAGGa-GGa---GGUGCCg -5'
29381 5' -61.8 NC_006151.1 + 132643 0.66 0.648767
Target:  5'- gGCGCccggaccuGGGCcGCcaCCUCgUCCGCGGa -3'
miRNA:   3'- aUGCG--------CCCGuCGa-GGAGgAGGUGCCg -5'
29381 5' -61.8 NC_006151.1 + 105812 0.66 0.648767
Target:  5'- gACGCGGacGCGGUg-UUCC-CCACGGUc -3'
miRNA:   3'- aUGCGCC--CGUCGagGAGGaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 88381 0.66 0.648767
Target:  5'- gGCGCGaGC-GCgUCCgcggCgUCCGCGGCc -3'
miRNA:   3'- aUGCGCcCGuCG-AGGa---GgAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 67101 0.66 0.648767
Target:  5'- gACGCGGuGCgccacuuucgccAGCgcgucacggucuUCCUCgUgCCGCGGCg -3'
miRNA:   3'- aUGCGCC-CG------------UCG------------AGGAGgA-GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 39269 0.66 0.648767
Target:  5'- aACGCccagGGGguGCUgCUgCUCU-CGGCg -3'
miRNA:   3'- aUGCG----CCCguCGAgGAgGAGGuGCCG- -5'
29381 5' -61.8 NC_006151.1 + 31592 0.66 0.648767
Target:  5'- gGCGCGcuccGC-GCUCCcCCgccgCCugGGCg -3'
miRNA:   3'- aUGCGCc---CGuCGAGGaGGa---GGugCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.