Results 21 - 40 of 180 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29381 | 5' | -61.8 | NC_006151.1 | + | 132715 | 0.66 | 0.628869 |
Target: 5'- uUGC-CGGGCAgGCacgagaaaggUCCUCguuccagcgCUCCAUGGCg -3' miRNA: 3'- -AUGcGCCCGU-CG----------AGGAG---------GAGGUGCCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 29064 | 0.66 | 0.61892 |
Target: 5'- gUugGCGGcGCcGCgggCC-CCgagacggCCGCGGCg -3' miRNA: 3'- -AugCGCC-CGuCGa--GGaGGa------GGUGCCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 57153 | 0.66 | 0.61892 |
Target: 5'- gGCGgGGGCgagGGCgUCCcCCggCGCGGCc -3' miRNA: 3'- aUGCgCCCG---UCG-AGGaGGagGUGCCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 69325 | 0.66 | 0.61892 |
Target: 5'- gUGCGCGGGC-GCgucgCCgcCCgcgagCGCGGCg -3' miRNA: 3'- -AUGCGCCCGuCGa---GGa-GGag---GUGCCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 87140 | 0.66 | 0.61892 |
Target: 5'- cUGCGCGcccaGCAGCUCCgcuacccgacgCCguacuacgcgcCCGCGGCg -3' miRNA: 3'- -AUGCGCc---CGUCGAGGa----------GGa----------GGUGCCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 127739 | 0.66 | 0.61892 |
Target: 5'- -uCGCGGGCGGgaaccggucaucCUCCUCCUCUuccuCGuCg -3' miRNA: 3'- auGCGCCCGUC------------GAGGAGGAGGu---GCcG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 26388 | 0.66 | 0.61892 |
Target: 5'- --gGCGGGCGGCgUCCUUC-CCGCc-- -3' miRNA: 3'- augCGCCCGUCG-AGGAGGaGGUGccg -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 135584 | 0.66 | 0.617925 |
Target: 5'- gAgGCGgaguucguccGGCGGCUcauaagcCCUCCcacggCCGCGGCg -3' miRNA: 3'- aUgCGC----------CCGUCGA-------GGAGGa----GGUGCCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 74656 | 0.66 | 0.617925 |
Target: 5'- gGCGCaguccucGGGCAGCUCC-CCguugcCCA-GGUa -3' miRNA: 3'- aUGCG-------CCCGUCGAGGaGGa----GGUgCCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 59147 | 0.66 | 0.615936 |
Target: 5'- -cCGCGGGCGGgUCCaggCCggcgucgcgcagcagCGCGGCg -3' miRNA: 3'- auGCGCCCGUCgAGGa--GGag-------------GUGCCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 99633 | 0.66 | 0.60898 |
Target: 5'- cGCGCGaGGCccucaacacguGGCUCgC-CUUCCGCGcGCa -3' miRNA: 3'- aUGCGC-CCG-----------UCGAG-GaGGAGGUGC-CG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 3088 | 0.66 | 0.60898 |
Target: 5'- aAgGCGGcgaGCAGCgCCgagaggCCgCCGCGGCg -3' miRNA: 3'- aUgCGCC---CGUCGaGGa-----GGaGGUGCCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 67689 | 0.66 | 0.60898 |
Target: 5'- -uCGCGcGCAGCUCCcgCUugUCCGCcuGGCg -3' miRNA: 3'- auGCGCcCGUCGAGGa-GG--AGGUG--CCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 21504 | 0.66 | 0.60898 |
Target: 5'- gGCGCGGGCgucaccggggcgGGCUCgggCUUCggCCGgGGCc -3' miRNA: 3'- aUGCGCCCG------------UCGAG---GAGGa-GGUgCCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 67977 | 0.66 | 0.60898 |
Target: 5'- cACGCagucgcGGCGGC-CCgCCggcgCCGCGGCc -3' miRNA: 3'- aUGCGc-----CCGUCGaGGaGGa---GGUGCCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 68638 | 0.66 | 0.60898 |
Target: 5'- cGCGCGucgcCGGCUCCaCUgCCACGGCc -3' miRNA: 3'- aUGCGCcc--GUCGAGGaGGaGGUGCCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 69018 | 0.66 | 0.60898 |
Target: 5'- aGCGCuccaGCAGCaCCagCUCCGCGGUg -3' miRNA: 3'- aUGCGcc--CGUCGaGGagGAGGUGCCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 17017 | 0.66 | 0.606001 |
Target: 5'- gGCGCGGGUGGCcgggaUCCcggcgacgaucacgUCCAgGGCg -3' miRNA: 3'- aUGCGCCCGUCGagg--AGG--------------AGGUgCCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 130329 | 0.66 | 0.599057 |
Target: 5'- cGCGCucGGGgAGCUCgCgcg-CCGCGGCg -3' miRNA: 3'- aUGCG--CCCgUCGAG-GaggaGGUGCCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 97846 | 0.66 | 0.599057 |
Target: 5'- gUGCGCGcGCAGCgcgucgUCCgcgUUCUCgGCGGCc -3' miRNA: 3'- -AUGCGCcCGUCG------AGG---AGGAGgUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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