miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 5' -61.8 NC_006151.1 + 132715 0.66 0.628869
Target:  5'- uUGC-CGGGCAgGCacgagaaaggUCCUCguuccagcgCUCCAUGGCg -3'
miRNA:   3'- -AUGcGCCCGU-CG----------AGGAG---------GAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 29064 0.66 0.61892
Target:  5'- gUugGCGGcGCcGCgggCC-CCgagacggCCGCGGCg -3'
miRNA:   3'- -AugCGCC-CGuCGa--GGaGGa------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 57153 0.66 0.61892
Target:  5'- gGCGgGGGCgagGGCgUCCcCCggCGCGGCc -3'
miRNA:   3'- aUGCgCCCG---UCG-AGGaGGagGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 69325 0.66 0.61892
Target:  5'- gUGCGCGGGC-GCgucgCCgcCCgcgagCGCGGCg -3'
miRNA:   3'- -AUGCGCCCGuCGa---GGa-GGag---GUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 87140 0.66 0.61892
Target:  5'- cUGCGCGcccaGCAGCUCCgcuacccgacgCCguacuacgcgcCCGCGGCg -3'
miRNA:   3'- -AUGCGCc---CGUCGAGGa----------GGa----------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 127739 0.66 0.61892
Target:  5'- -uCGCGGGCGGgaaccggucaucCUCCUCCUCUuccuCGuCg -3'
miRNA:   3'- auGCGCCCGUC------------GAGGAGGAGGu---GCcG- -5'
29381 5' -61.8 NC_006151.1 + 26388 0.66 0.61892
Target:  5'- --gGCGGGCGGCgUCCUUC-CCGCc-- -3'
miRNA:   3'- augCGCCCGUCG-AGGAGGaGGUGccg -5'
29381 5' -61.8 NC_006151.1 + 135584 0.66 0.617925
Target:  5'- gAgGCGgaguucguccGGCGGCUcauaagcCCUCCcacggCCGCGGCg -3'
miRNA:   3'- aUgCGC----------CCGUCGA-------GGAGGa----GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 74656 0.66 0.617925
Target:  5'- gGCGCaguccucGGGCAGCUCC-CCguugcCCA-GGUa -3'
miRNA:   3'- aUGCG-------CCCGUCGAGGaGGa----GGUgCCG- -5'
29381 5' -61.8 NC_006151.1 + 59147 0.66 0.615936
Target:  5'- -cCGCGGGCGGgUCCaggCCggcgucgcgcagcagCGCGGCg -3'
miRNA:   3'- auGCGCCCGUCgAGGa--GGag-------------GUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 99633 0.66 0.60898
Target:  5'- cGCGCGaGGCccucaacacguGGCUCgC-CUUCCGCGcGCa -3'
miRNA:   3'- aUGCGC-CCG-----------UCGAG-GaGGAGGUGC-CG- -5'
29381 5' -61.8 NC_006151.1 + 3088 0.66 0.60898
Target:  5'- aAgGCGGcgaGCAGCgCCgagaggCCgCCGCGGCg -3'
miRNA:   3'- aUgCGCC---CGUCGaGGa-----GGaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 67689 0.66 0.60898
Target:  5'- -uCGCGcGCAGCUCCcgCUugUCCGCcuGGCg -3'
miRNA:   3'- auGCGCcCGUCGAGGa-GG--AGGUG--CCG- -5'
29381 5' -61.8 NC_006151.1 + 21504 0.66 0.60898
Target:  5'- gGCGCGGGCgucaccggggcgGGCUCgggCUUCggCCGgGGCc -3'
miRNA:   3'- aUGCGCCCG------------UCGAG---GAGGa-GGUgCCG- -5'
29381 5' -61.8 NC_006151.1 + 67977 0.66 0.60898
Target:  5'- cACGCagucgcGGCGGC-CCgCCggcgCCGCGGCc -3'
miRNA:   3'- aUGCGc-----CCGUCGaGGaGGa---GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 68638 0.66 0.60898
Target:  5'- cGCGCGucgcCGGCUCCaCUgCCACGGCc -3'
miRNA:   3'- aUGCGCcc--GUCGAGGaGGaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 69018 0.66 0.60898
Target:  5'- aGCGCuccaGCAGCaCCagCUCCGCGGUg -3'
miRNA:   3'- aUGCGcc--CGUCGaGGagGAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 17017 0.66 0.606001
Target:  5'- gGCGCGGGUGGCcgggaUCCcggcgacgaucacgUCCAgGGCg -3'
miRNA:   3'- aUGCGCCCGUCGagg--AGG--------------AGGUgCCG- -5'
29381 5' -61.8 NC_006151.1 + 130329 0.66 0.599057
Target:  5'- cGCGCucGGGgAGCUCgCgcg-CCGCGGCg -3'
miRNA:   3'- aUGCG--CCCgUCGAG-GaggaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 97846 0.66 0.599057
Target:  5'- gUGCGCGcGCAGCgcgucgUCCgcgUUCUCgGCGGCc -3'
miRNA:   3'- -AUGCGCcCGUCG------AGG---AGGAGgUGCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.