miRNA display CGI


Results 81 - 100 of 516 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29382 3' -63.2 NC_006151.1 + 77519 0.73 0.206675
Target:  5'- aGCUGGCGCGCCuCGGCcGCGcGUggGCCGCc -3'
miRNA:   3'- -UGGCCGCGCGG-GCUGuCGU-CG--UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 41754 0.73 0.211661
Target:  5'- gACCGGCGUcacGUCCGGCGGaAGUugCGCg -3'
miRNA:   3'- -UGGCCGCG---CGGGCUGUCgUCGugGUG- -5'
29382 3' -63.2 NC_006151.1 + 70795 0.73 0.211661
Target:  5'- cACCGGCGUgGCCguCGugGGCAGCuACCGg -3'
miRNA:   3'- -UGGCCGCG-CGG--GCugUCGUCG-UGGUg -5'
29382 3' -63.2 NC_006151.1 + 20877 0.73 0.211661
Target:  5'- aGCaGGCGCGCuuGgggucgaggcGCAGCAGCuCCACg -3'
miRNA:   3'- -UGgCCGCGCGggC----------UGUCGUCGuGGUG- -5'
29382 3' -63.2 NC_006151.1 + 59502 0.73 0.211661
Target:  5'- cCCGGCG-GCCuccgCGACGcgcgcGCAGCGCCGCg -3'
miRNA:   3'- uGGCCGCgCGG----GCUGU-----CGUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 81350 0.73 0.216751
Target:  5'- cGCCGcCGCGCCCGGggcccCGGCGGgCGCCAg -3'
miRNA:   3'- -UGGCcGCGCGGGCU-----GUCGUC-GUGGUg -5'
29382 3' -63.2 NC_006151.1 + 100617 0.73 0.216751
Target:  5'- cCUGGCGCGCUgGGaccuGGuCAGCGCCGCg -3'
miRNA:   3'- uGGCCGCGCGGgCUg---UC-GUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 99560 0.73 0.216751
Target:  5'- gGCgCGGCGCGCgCGGC-GCuGCugCGCg -3'
miRNA:   3'- -UG-GCCGCGCGgGCUGuCGuCGugGUG- -5'
29382 3' -63.2 NC_006151.1 + 73119 0.73 0.221944
Target:  5'- -gCGGCGCGCCCGcGCGGguuGCACgCGCg -3'
miRNA:   3'- ugGCCGCGCGGGC-UGUCgu-CGUG-GUG- -5'
29382 3' -63.2 NC_006151.1 + 59923 0.73 0.221944
Target:  5'- cGCagaaGGCGCGCgCCGuCAGCGGCGgcUCGCa -3'
miRNA:   3'- -UGg---CCGCGCG-GGCuGUCGUCGU--GGUG- -5'
29382 3' -63.2 NC_006151.1 + 101938 0.73 0.227243
Target:  5'- gGCCGGCGaGCCaggagGACcugAGCAGCACgCACa -3'
miRNA:   3'- -UGGCCGCgCGGg----CUG---UCGUCGUG-GUG- -5'
29382 3' -63.2 NC_006151.1 + 56591 0.72 0.232104
Target:  5'- gGCUGGUGCGgacgcgcCCCGGCGGCGcGCucACCGCg -3'
miRNA:   3'- -UGGCCGCGC-------GGGCUGUCGU-CG--UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 137661 0.72 0.232649
Target:  5'- cCCGGCggacgaGCGCCCGcCGuGCGGCuGCCGCg -3'
miRNA:   3'- uGGCCG------CGCGGGCuGU-CGUCG-UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 133330 0.72 0.232649
Target:  5'- --aGGCGCGCCgGGCGGCcGGUuCCGCg -3'
miRNA:   3'- uggCCGCGCGGgCUGUCG-UCGuGGUG- -5'
29382 3' -63.2 NC_006151.1 + 96559 0.72 0.232649
Target:  5'- -aCGGCGCGCgUGAUAaaCAGCGCCGCc -3'
miRNA:   3'- ugGCCGCGCGgGCUGUc-GUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 136937 0.72 0.237607
Target:  5'- aGCCGG-GCG-CCGACGGCGccguccuGCGCCGCc -3'
miRNA:   3'- -UGGCCgCGCgGGCUGUCGU-------CGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 23578 0.72 0.238163
Target:  5'- gGCCGGCGUcguacaGCCCgGGCuGCAGCACgAg -3'
miRNA:   3'- -UGGCCGCG------CGGG-CUGuCGUCGUGgUg -5'
29382 3' -63.2 NC_006151.1 + 38628 0.72 0.238163
Target:  5'- uCCGGCGCgGCCCuccgcgggGACGGCcacGGCcACCGCg -3'
miRNA:   3'- uGGCCGCG-CGGG--------CUGUCG---UCG-UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 18558 0.72 0.238163
Target:  5'- gGCCgcgaGGC-CGCCCGGCGGCGGgAgCACa -3'
miRNA:   3'- -UGG----CCGcGCGGGCUGUCGUCgUgGUG- -5'
29382 3' -63.2 NC_006151.1 + 4048 0.72 0.240399
Target:  5'- cGCgGGCGCGggcCCCGuccacgcuguagcgcAcCAGCGGCGCCACg -3'
miRNA:   3'- -UGgCCGCGC---GGGC---------------U-GUCGUCGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.