miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29382 5' -56.5 NC_006151.1 + 132215 1.08 0.002756
Target:  5'- uGAACAGCACCGGGUGGAAGAGGCACGu -3'
miRNA:   3'- -CUUGUCGUGGCCCACCUUCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 95627 0.66 0.873951
Target:  5'- -uGCAGCgagGCCaGGUGc--GAGGCGCGg -3'
miRNA:   3'- cuUGUCG---UGGcCCACcuuCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 27017 0.66 0.873951
Target:  5'- gGAGCAGgGCCugccagcaGGG-GGccGAGGGGCGCu -3'
miRNA:   3'- -CUUGUCgUGG--------CCCaCC--UUCUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 8216 0.66 0.871017
Target:  5'- cGAAgAGgGCCGGGUccccuucccggcggGGAGGGccgggccGGCGCGc -3'
miRNA:   3'- -CUUgUCgUGGCCCA--------------CCUUCU-------CCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 121091 0.66 0.869537
Target:  5'- cGGCGGCGCCGGGcUGcacgaccacucgcucGggGAG-CACGu -3'
miRNA:   3'- cUUGUCGUGGCCC-AC---------------CuuCUCcGUGC- -5'
29382 5' -56.5 NC_006151.1 + 132764 0.66 0.869537
Target:  5'- cAGCAGCGCCGGGcccucgucGAAggccaggucgcugauGAGGCGCu -3'
miRNA:   3'- cUUGUCGUGGCCCac------CUU---------------CUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 3887 0.66 0.866551
Target:  5'- --cCGGCGCCGGcGcUGGGAcgacGAGGC-CGg -3'
miRNA:   3'- cuuGUCGUGGCC-C-ACCUU----CUCCGuGC- -5'
29382 5' -56.5 NC_006151.1 + 137053 0.66 0.866551
Target:  5'- --cCGGCGCCGGuguaccgcGUGGAGcuGGCGCa -3'
miRNA:   3'- cuuGUCGUGGCC--------CACCUUcuCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 33244 0.66 0.866551
Target:  5'- gGAGgGGguCCGGG-GGAAGGguGGgGCGg -3'
miRNA:   3'- -CUUgUCguGGCCCaCCUUCU--CCgUGC- -5'
29382 5' -56.5 NC_006151.1 + 141180 0.66 0.873951
Target:  5'- uAGCGGCAgUCGGGgcaGGucaacugcGGGAGGCACu -3'
miRNA:   3'- cUUGUCGU-GGCCCa--CC--------UUCUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 8385 0.66 0.873951
Target:  5'- cGGGgGGguCCGGGaUGGggGGGGUc-- -3'
miRNA:   3'- -CUUgUCguGGCCC-ACCuuCUCCGugc -5'
29382 5' -56.5 NC_006151.1 + 30957 0.66 0.873951
Target:  5'- cGGCGGC-CCGGGagagcGGgcGGGGgACGg -3'
miRNA:   3'- cUUGUCGuGGCCCa----CCuuCUCCgUGC- -5'
29382 5' -56.5 NC_006151.1 + 81722 0.66 0.888093
Target:  5'- ---gGGCGCCGGGUccucgccgaaGGuccAGGcGGCGCGg -3'
miRNA:   3'- cuugUCGUGGCCCA----------CCu--UCU-CCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 67659 0.66 0.888093
Target:  5'- gGAACAGCACgc---GGAAGAGGCcCGa -3'
miRNA:   3'- -CUUGUCGUGgcccaCCUUCUCCGuGC- -5'
29382 5' -56.5 NC_006151.1 + 22265 0.66 0.888093
Target:  5'- ---gGGUACgCGGGcgGGggGAaggucGGCGCGg -3'
miRNA:   3'- cuugUCGUG-GCCCa-CCuuCU-----CCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 37407 0.66 0.881134
Target:  5'- cGGCGGCGCCGGGgacucccgcGAGGGGCucugggACGa -3'
miRNA:   3'- cUUGUCGUGGCCCacc------UUCUCCG------UGC- -5'
29382 5' -56.5 NC_006151.1 + 136983 0.66 0.881134
Target:  5'- -cGCcGCGCCGGGcGGc--GGGCGCGc -3'
miRNA:   3'- cuUGuCGUGGCCCaCCuucUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 120060 0.66 0.881134
Target:  5'- cGGGCAGC-CCG--UGGAGG-GGCGCa -3'
miRNA:   3'- -CUUGUCGuGGCccACCUUCuCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 32121 0.66 0.881134
Target:  5'- aGAGgGGgACgGGG-GGAgagagagcgAGGGGCGCGa -3'
miRNA:   3'- -CUUgUCgUGgCCCaCCU---------UCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 5271 0.66 0.873951
Target:  5'- cGGAgGGCGagCGGGccgGGGAGAGGUcCGa -3'
miRNA:   3'- -CUUgUCGUg-GCCCa--CCUUCUCCGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.