miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 5' -56.7 NC_006151.1 + 130444 1.09 0.001983
Target:  5'- cUGCAGCGGCGCCAGAAACAUGGCGUGg -3'
miRNA:   3'- -ACGUCGCCGCGGUCUUUGUACCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 6297 0.79 0.206525
Target:  5'- gGCGGCGGcCGCCAGGAGC-UGGC-UGa -3'
miRNA:   3'- aCGUCGCC-GCGGUCUUUGuACCGcAC- -5'
29383 5' -56.7 NC_006151.1 + 90740 0.78 0.24552
Target:  5'- gGCGGCGGCGCCcucGGggGCGgcgGGCacgGUGg -3'
miRNA:   3'- aCGUCGCCGCGG---UCuuUGUa--CCG---CAC- -5'
29383 5' -56.7 NC_006151.1 + 40531 0.77 0.283641
Target:  5'- cUGCGGCGGCGgCGGAG--GUGGCGg- -3'
miRNA:   3'- -ACGUCGCCGCgGUCUUugUACCGCac -5'
29383 5' -56.7 NC_006151.1 + 5092 0.77 0.264023
Target:  5'- cGCGGCGGgCGCCggcGGAGACgGUGGCGg- -3'
miRNA:   3'- aCGUCGCC-GCGG---UCUUUG-UACCGCac -5'
29383 5' -56.7 NC_006151.1 + 59422 0.77 0.257733
Target:  5'- aGCAGCGGCGCCAGcucGGCGUcGGCc-- -3'
miRNA:   3'- aCGUCGCCGCGGUCu--UUGUA-CCGcac -5'
29383 5' -56.7 NC_006151.1 + 5245 0.76 0.33385
Target:  5'- cGCGGCGGCGgCGGggGCccggggGGCGg- -3'
miRNA:   3'- aCGUCGCCGCgGUCuuUGua----CCGCac -5'
29383 5' -56.7 NC_006151.1 + 29602 0.76 0.304395
Target:  5'- gGCcGCGGCGgCGGggGC-UGGUGUGg -3'
miRNA:   3'- aCGuCGCCGCgGUCuuUGuACCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 6230 0.76 0.33385
Target:  5'- aGCcGCGGCGCCGGGAGCccUGGCu-- -3'
miRNA:   3'- aCGuCGCCGCGGUCUUUGu-ACCGcac -5'
29383 5' -56.7 NC_006151.1 + 63485 0.76 0.29735
Target:  5'- gGCGGCGGCGCCcGAAGaagGUGGCcagGUGg -3'
miRNA:   3'- aCGUCGCCGCGGuCUUUg--UACCG---CAC- -5'
29383 5' -56.7 NC_006151.1 + 65460 0.75 0.36534
Target:  5'- cGCAGCGGCGCCgAGAGuccCAUcaGGCGc- -3'
miRNA:   3'- aCGUCGCCGCGG-UCUUu--GUA--CCGCac -5'
29383 5' -56.7 NC_006151.1 + 81539 0.75 0.373526
Target:  5'- cGCGGCGGCGCgcuccgCGGugcACAUGGcCGUGg -3'
miRNA:   3'- aCGUCGCCGCG------GUCuu-UGUACC-GCAC- -5'
29383 5' -56.7 NC_006151.1 + 97364 0.75 0.357278
Target:  5'- cGCGGCGGCGgCGGgcGCGgcgggGGCGUc -3'
miRNA:   3'- aCGUCGCCGCgGUCuuUGUa----CCGCAc -5'
29383 5' -56.7 NC_006151.1 + 122464 0.75 0.373526
Target:  5'- gGCGGCGGCgggcgccgagGCCGGGGACGcgGGCGa- -3'
miRNA:   3'- aCGUCGCCG----------CGGUCUUUGUa-CCGCac -5'
29383 5' -56.7 NC_006151.1 + 134804 0.74 0.416283
Target:  5'- cGCGGCGGCccgcGCCGGAcccgGACgGUGGCGa- -3'
miRNA:   3'- aCGUCGCCG----CGGUCU----UUG-UACCGCac -5'
29383 5' -56.7 NC_006151.1 + 103639 0.74 0.415399
Target:  5'- gGCGGCGGCGCUGGcggacgcGGACAcGGCGg- -3'
miRNA:   3'- aCGUCGCCGCGGUC-------UUUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 89488 0.74 0.425187
Target:  5'- cGCGGCGGCgaGCCGGuacGCGcgGGUGUGg -3'
miRNA:   3'- aCGUCGCCG--CGGUCuu-UGUa-CCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 75280 0.74 0.425187
Target:  5'- cGCAGCGcCGCCA---GCGUGGCGUc -3'
miRNA:   3'- aCGUCGCcGCGGUcuuUGUACCGCAc -5'
29383 5' -56.7 NC_006151.1 + 9492 0.74 0.416283
Target:  5'- gGCcGCGGCGUgGGAGAgCggGGCGUGu -3'
miRNA:   3'- aCGuCGCCGCGgUCUUU-GuaCCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 53972 0.73 0.461903
Target:  5'- gGCGGCGGCGCCucc-GCG-GGCGUc -3'
miRNA:   3'- aCGUCGCCGCGGucuuUGUaCCGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.