miRNA display CGI


Results 101 - 120 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 3' -53.5 NC_006151.1 + 100195 0.68 0.91484
Target:  5'- gGCgaccUGCUGGAC-UCGaugGCCACGGCcGCg -3'
miRNA:   3'- -CGa---ACGGCUUGcAGC---UGGUGUCGuCG- -5'
29384 3' -53.5 NC_006151.1 + 29590 0.68 0.91484
Target:  5'- ---cGC--GGCGgcugCGGCCGCGGCGGCg -3'
miRNA:   3'- cgaaCGgcUUGCa---GCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 129691 0.68 0.920649
Target:  5'- ---gGCCGc-CGUgGACCGCGGCgccgAGCa -3'
miRNA:   3'- cgaaCGGCuuGCAgCUGGUGUCG----UCG- -5'
29384 3' -53.5 NC_006151.1 + 54620 0.68 0.920649
Target:  5'- ---cGCCGGGCG-CGcCCcggggggaaGCGGCGGCg -3'
miRNA:   3'- cgaaCGGCUUGCaGCuGG---------UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 70963 0.68 0.920649
Target:  5'- cGCgugGCCGu-CGagGGCaACAGCAGCc -3'
miRNA:   3'- -CGaa-CGGCuuGCagCUGgUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 66589 0.68 0.92621
Target:  5'- cGCgcgGCCGAgGCGcUCGACUucgccgccuacgACGGCgAGCg -3'
miRNA:   3'- -CGaa-CGGCU-UGC-AGCUGG------------UGUCG-UCG- -5'
29384 3' -53.5 NC_006151.1 + 17966 0.68 0.92621
Target:  5'- cGCcUGCCG-GCGUC--CCAC-GCGGCg -3'
miRNA:   3'- -CGaACGGCuUGCAGcuGGUGuCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 128367 0.68 0.92621
Target:  5'- cGCgugguggUGCaCGAAgGUCacgagguCCACGGCGGCc -3'
miRNA:   3'- -CGa------ACG-GCUUgCAGcu-----GGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 68627 0.68 0.92621
Target:  5'- cGCgaacUGcCCGcGCGUCGccggcuccacuGCCACGGcCGGCg -3'
miRNA:   3'- -CGa---AC-GGCuUGCAGC-----------UGGUGUC-GUCG- -5'
29384 3' -53.5 NC_006151.1 + 67821 0.68 0.92621
Target:  5'- aGCUgccGCCGu-CGUCG-UCGCGGgGGCu -3'
miRNA:   3'- -CGAa--CGGCuuGCAGCuGGUGUCgUCG- -5'
29384 3' -53.5 NC_006151.1 + 49244 0.68 0.92621
Target:  5'- cGCUcgGCUGGGCGcggcUCGugCGCgccgucguccAGCGGCu -3'
miRNA:   3'- -CGAa-CGGCUUGC----AGCugGUG----------UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 36338 0.68 0.92621
Target:  5'- gGCUccggGCCccGGcCGcCGACCcCGGCAGCa -3'
miRNA:   3'- -CGAa---CGG--CUuGCaGCUGGuGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 59430 0.68 0.92621
Target:  5'- cGCcaGCUcGGCGUCGGCCGCcGCcGCc -3'
miRNA:   3'- -CGaaCGGcUUGCAGCUGGUGuCGuCG- -5'
29384 3' -53.5 NC_006151.1 + 5065 0.68 0.92621
Target:  5'- gGCggaggagGCCGAgggccGCGg-GGCCGCGGCGGg -3'
miRNA:   3'- -CGaa-----CGGCU-----UGCagCUGGUGUCGUCg -5'
29384 3' -53.5 NC_006151.1 + 124364 0.68 0.920649
Target:  5'- -----aCGGACGugaUCGACCGCcGCGGCa -3'
miRNA:   3'- cgaacgGCUUGC---AGCUGGUGuCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 120913 0.68 0.920649
Target:  5'- uGCUggGCCuGGGCGUCagcaaguACCACGGCauGGCc -3'
miRNA:   3'- -CGAa-CGG-CUUGCAGc------UGGUGUCG--UCG- -5'
29384 3' -53.5 NC_006151.1 + 111652 0.68 0.920649
Target:  5'- uGCUcgGCCGugauCG-CGGCCAgGGgGGCg -3'
miRNA:   3'- -CGAa-CGGCuu--GCaGCUGGUgUCgUCG- -5'
29384 3' -53.5 NC_006151.1 + 104205 0.68 0.920649
Target:  5'- ---cGCCGAGacCGU-GACCACGGC-GCu -3'
miRNA:   3'- cgaaCGGCUU--GCAgCUGGUGUCGuCG- -5'
29384 3' -53.5 NC_006151.1 + 97247 0.68 0.920649
Target:  5'- gGCgcgGCCGcgcAUGUCGGgggcCCACAcggGCAGCg -3'
miRNA:   3'- -CGaa-CGGCu--UGCAGCU----GGUGU---CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 77525 0.68 0.920649
Target:  5'- cGCgccucgGCCGcGCGUgGGCCGCcccGCAGg -3'
miRNA:   3'- -CGaa----CGGCuUGCAgCUGGUGu--CGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.