miRNA display CGI


Results 121 - 140 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 3' -53.5 NC_006151.1 + 49244 0.68 0.92621
Target:  5'- cGCUcgGCUGGGCGcggcUCGugCGCgccgucguccAGCGGCu -3'
miRNA:   3'- -CGAa-CGGCUUGC----AGCugGUG----------UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 67821 0.68 0.92621
Target:  5'- aGCUgccGCCGu-CGUCG-UCGCGGgGGCu -3'
miRNA:   3'- -CGAa--CGGCuuGCAGCuGGUGUCgUCG- -5'
29384 3' -53.5 NC_006151.1 + 68627 0.68 0.92621
Target:  5'- cGCgaacUGcCCGcGCGUCGccggcuccacuGCCACGGcCGGCg -3'
miRNA:   3'- -CGa---AC-GGCuUGCAGC-----------UGGUGUC-GUCG- -5'
29384 3' -53.5 NC_006151.1 + 128367 0.68 0.92621
Target:  5'- cGCgugguggUGCaCGAAgGUCacgagguCCACGGCGGCc -3'
miRNA:   3'- -CGa------ACG-GCUUgCAGcu-----GGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 17966 0.68 0.92621
Target:  5'- cGCcUGCCG-GCGUC--CCAC-GCGGCg -3'
miRNA:   3'- -CGaACGGCuUGCAGcuGGUGuCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 66589 0.68 0.92621
Target:  5'- cGCgcgGCCGAgGCGcUCGACUucgccgccuacgACGGCgAGCg -3'
miRNA:   3'- -CGaa-CGGCU-UGC-AGCUGG------------UGUCG-UCG- -5'
29384 3' -53.5 NC_006151.1 + 111652 0.68 0.920649
Target:  5'- uGCUcgGCCGugauCG-CGGCCAgGGgGGCg -3'
miRNA:   3'- -CGAa-CGGCuu--GCaGCUGGUgUCgUCG- -5'
29384 3' -53.5 NC_006151.1 + 104205 0.68 0.920649
Target:  5'- ---cGCCGAGacCGU-GACCACGGC-GCu -3'
miRNA:   3'- cgaaCGGCUU--GCAgCUGGUGUCGuCG- -5'
29384 3' -53.5 NC_006151.1 + 97247 0.68 0.920649
Target:  5'- gGCgcgGCCGcgcAUGUCGGgggcCCACAcggGCAGCg -3'
miRNA:   3'- -CGaa-CGGCu--UGCAGCU----GGUGU---CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 133476 0.68 0.91484
Target:  5'- cGCgaggcgGCCGcgGGCGUC-ACCuuGGCGGCg -3'
miRNA:   3'- -CGaa----CGGC--UUGCAGcUGGugUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 25288 0.68 0.91484
Target:  5'- uGCUUgGCCGcgggGACGUgGGCgaACGGguGCg -3'
miRNA:   3'- -CGAA-CGGC----UUGCAgCUGg-UGUCguCG- -5'
29384 3' -53.5 NC_006151.1 + 118197 0.68 0.91484
Target:  5'- gGCUUcGCCGGGCacgUGGCCGUGGUGGCg -3'
miRNA:   3'- -CGAA-CGGCUUGca-GCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 70884 0.68 0.918932
Target:  5'- ---cGCCGAcgagaucgcgcgcuGCGUCGugCGCuGCcuGGCg -3'
miRNA:   3'- cgaaCGGCU--------------UGCAGCugGUGuCG--UCG- -5'
29384 3' -53.5 NC_006151.1 + 85772 0.68 0.920079
Target:  5'- cGCUggcGCUGGACGcgcacUCGAuCCGCGcgcgcguGCAGCg -3'
miRNA:   3'- -CGAa--CGGCUUGC-----AGCU-GGUGU-------CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 2327 0.68 0.920649
Target:  5'- aGCggggcgGCCucGGCGUCgGGCUcCAGCAGCg -3'
miRNA:   3'- -CGaa----CGGc-UUGCAG-CUGGuGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 57605 0.68 0.920649
Target:  5'- ---gGCCG-GCcUCGGCCGCGGCcGCc -3'
miRNA:   3'- cgaaCGGCuUGcAGCUGGUGUCGuCG- -5'
29384 3' -53.5 NC_006151.1 + 129691 0.68 0.920649
Target:  5'- ---gGCCGc-CGUgGACCGCGGCgccgAGCa -3'
miRNA:   3'- cgaaCGGCuuGCAgCUGGUGUCG----UCG- -5'
29384 3' -53.5 NC_006151.1 + 54620 0.68 0.920649
Target:  5'- ---cGCCGGGCG-CGcCCcggggggaaGCGGCGGCg -3'
miRNA:   3'- cgaaCGGCUUGCaGCuGG---------UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 70963 0.68 0.920649
Target:  5'- cGCgugGCCGu-CGagGGCaACAGCAGCc -3'
miRNA:   3'- -CGaa-CGGCuuGCagCUGgUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 77525 0.68 0.920649
Target:  5'- cGCgccucgGCCGcGCGUgGGCCGCcccGCAGg -3'
miRNA:   3'- -CGaa----CGGCuUGCAgCUGGUGu--CGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.