miRNA display CGI


Results 61 - 80 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 3' -53.5 NC_006151.1 + 106751 0.71 0.761967
Target:  5'- gGCUcgccGCCGAgcagcgcgacgcGCGUgagcgccuggaccUGGCCGCGGCGGCg -3'
miRNA:   3'- -CGAa---CGGCU------------UGCA-------------GCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 57940 0.71 0.800467
Target:  5'- cGCggaaGCCGAGCG-CgGGCCACAGCccguccgugAGCc -3'
miRNA:   3'- -CGaa--CGGCUUGCaG-CUGGUGUCG---------UCG- -5'
29384 3' -53.5 NC_006151.1 + 60373 0.71 0.781978
Target:  5'- aGCUgaGCCcGACGgUGACCACGGUGGUg -3'
miRNA:   3'- -CGAa-CGGcUUGCaGCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 135363 0.7 0.827
Target:  5'- ---cGCCGcGCGUUGGCCGCGuGCGccGCg -3'
miRNA:   3'- cgaaCGGCuUGCAGCUGGUGU-CGU--CG- -5'
29384 3' -53.5 NC_006151.1 + 132826 0.7 0.827
Target:  5'- gGCUgGCCGcccGCGggaCGGCCACcacgGGCGGCc -3'
miRNA:   3'- -CGAaCGGCu--UGCa--GCUGGUG----UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 82981 0.7 0.818328
Target:  5'- --aUGCCGcGCGUCugcgccGCCACGGCcGCg -3'
miRNA:   3'- cgaACGGCuUGCAGc-----UGGUGUCGuCG- -5'
29384 3' -53.5 NC_006151.1 + 81190 0.7 0.818328
Target:  5'- ---cGCCGAGCGUguacgccgGGCCGCAGUccgGGCg -3'
miRNA:   3'- cgaaCGGCUUGCAg-------CUGGUGUCG---UCG- -5'
29384 3' -53.5 NC_006151.1 + 136394 0.7 0.827
Target:  5'- cGCUucugcUGCCuGAGCGgcuacgcgCGGggccCCGCGGCGGCg -3'
miRNA:   3'- -CGA-----ACGG-CUUGCa-------GCU----GGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 36619 0.7 0.818328
Target:  5'- cGCcggGCCGGucucgGCGccCGGCgGCGGCGGCg -3'
miRNA:   3'- -CGaa-CGGCU-----UGCa-GCUGgUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 117322 0.7 0.827
Target:  5'- ---cGCCGAgggcgGCGUCGGCCuCGGCcuuGCc -3'
miRNA:   3'- cgaaCGGCU-----UGCAGCUGGuGUCGu--CG- -5'
29384 3' -53.5 NC_006151.1 + 91111 0.7 0.827
Target:  5'- ---gGCCGcGGCGcccuUCG-CCACGGCGGCg -3'
miRNA:   3'- cgaaCGGC-UUGC----AGCuGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 83580 0.7 0.851888
Target:  5'- cGCggGCCcgaaGAGCGggaccaggcgCGugUGCAGCAGCa -3'
miRNA:   3'- -CGaaCGG----CUUGCa---------GCugGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 72266 0.7 0.818328
Target:  5'- ---cGCCGAGCGgcgUGGCCAgCAuGCGGUg -3'
miRNA:   3'- cgaaCGGCUUGCa--GCUGGU-GU-CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 113876 0.7 0.818328
Target:  5'- gGCUccUGCgGcgcaaguCGUCGGCCGC-GCGGCg -3'
miRNA:   3'- -CGA--ACGgCuu-----GCAGCUGGUGuCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 72336 0.7 0.827
Target:  5'- aGCcaugGCCGcgagcACGUCGccGCCGCagGGCAGCg -3'
miRNA:   3'- -CGaa--CGGCu----UGCAGC--UGGUG--UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 88910 0.7 0.83549
Target:  5'- gGCgucgGgCGAGCGgaagCGcCCGCGGCGGUa -3'
miRNA:   3'- -CGaa--CgGCUUGCa---GCuGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 22909 0.7 0.818328
Target:  5'- gGCgaGaCGAAgGUCGGCUcCGGCGGCa -3'
miRNA:   3'- -CGaaCgGCUUgCAGCUGGuGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 75218 0.7 0.818328
Target:  5'- ---cGUCGGggcgcGCGUCGGCCACGuaGGCg -3'
miRNA:   3'- cgaaCGGCU-----UGCAGCUGGUGUcgUCG- -5'
29384 3' -53.5 NC_006151.1 + 94251 0.7 0.851888
Target:  5'- gGCUcGCUGAGCG-CGGCCAC-GUccuuGGCg -3'
miRNA:   3'- -CGAaCGGCUUGCaGCUGGUGuCG----UCG- -5'
29384 3' -53.5 NC_006151.1 + 44570 0.7 0.851888
Target:  5'- cGC-UGCCGAggaGC-UCcGCUGCAGCGGCg -3'
miRNA:   3'- -CGaACGGCU---UGcAGcUGGUGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.