miRNA display CGI


Results 101 - 120 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 3' -53.5 NC_006151.1 + 67583 0.69 0.880018
Target:  5'- aGCccGCCGAugagcucggaggcgACGUCGACgAUcuuGCGGCg -3'
miRNA:   3'- -CGaaCGGCU--------------UGCAGCUGgUGu--CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 67538 0.69 0.867464
Target:  5'- cGCcaGCCGGcguCGUUGACCACcacGUGGCg -3'
miRNA:   3'- -CGaaCGGCUu--GCAGCUGGUGu--CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 54097 0.69 0.867464
Target:  5'- gGCggcgGCC--AUGUCGGCUgcgACGGCGGCg -3'
miRNA:   3'- -CGaa--CGGcuUGCAGCUGG---UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 34621 0.69 0.867464
Target:  5'- cGCgagGCgCGggUGgggCGACCGCGGgGGUc -3'
miRNA:   3'- -CGaa-CG-GCuuGCa--GCUGGUGUCgUCG- -5'
29384 3' -53.5 NC_006151.1 + 122286 0.69 0.859002
Target:  5'- uGCUcgGCUGcgUGUgCGACCACcucacgcGGCAGCu -3'
miRNA:   3'- -CGAa-CGGCuuGCA-GCUGGUG-------UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 68277 0.69 0.859782
Target:  5'- cGCggcGCCGGGC----GCCACGGCGGCc -3'
miRNA:   3'- -CGaa-CGGCUUGcagcUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 118842 0.69 0.865182
Target:  5'- uGCUgcccGCCG-ACGU-GACCuucacgcucuuugaGCAGCGGCg -3'
miRNA:   3'- -CGAa---CGGCuUGCAgCUGG--------------UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 142984 0.69 0.859782
Target:  5'- --cUGCCGcggGugGgccCGACCGCAGCAucGCg -3'
miRNA:   3'- cgaACGGC---UugCa--GCUGGUGUCGU--CG- -5'
29384 3' -53.5 NC_006151.1 + 79675 0.69 0.859782
Target:  5'- ---cGCCGGAuCGUCGccGCCGCGgggaccGCAGCc -3'
miRNA:   3'- cgaaCGGCUU-GCAGC--UGGUGU------CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 90642 0.69 0.867464
Target:  5'- cGCUUGgCGAugGgCGugUACAugcgcgggGCGGCg -3'
miRNA:   3'- -CGAACgGCUugCaGCugGUGU--------CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 2115 0.69 0.874927
Target:  5'- cGCgggGCCGGcCGUCG-CCGCcGCGGa -3'
miRNA:   3'- -CGaa-CGGCUuGCAGCuGGUGuCGUCg -5'
29384 3' -53.5 NC_006151.1 + 60090 0.69 0.874927
Target:  5'- cGCgccGCCgcGAACGcCgGGCgGCAGCGGCg -3'
miRNA:   3'- -CGaa-CGG--CUUGCaG-CUGgUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 82251 0.69 0.87785
Target:  5'- cGCgcagGCCGAggaaggccucgcccaGCGUcacguugaagaCGGCCGCggGGCAGCg -3'
miRNA:   3'- -CGaa--CGGCU---------------UGCA-----------GCUGGUG--UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 128636 0.69 0.866705
Target:  5'- ---gGCgGAccacgcgcGCGUCGACCguguccaucauccACAGCAGCc -3'
miRNA:   3'- cgaaCGgCU--------UGCAGCUGG-------------UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 122431 0.69 0.859782
Target:  5'- ---cGCCGAggcccgggagGCGgaggcggCGuCCACGGCGGCg -3'
miRNA:   3'- cgaaCGGCU----------UGCa------GCuGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 113952 0.69 0.889175
Target:  5'- cUUUGCCu-ACG-CGGCCGC-GCAGCc -3'
miRNA:   3'- cGAACGGcuUGCaGCUGGUGuCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 88376 0.69 0.889175
Target:  5'- gGCUcgGCgCGAGCG-CGuCCGCGGCGuccGCg -3'
miRNA:   3'- -CGAa-CG-GCUUGCaGCuGGUGUCGU---CG- -5'
29384 3' -53.5 NC_006151.1 + 69035 0.69 0.889175
Target:  5'- aGCUccGCgGuGGCGUCaaaGACCgGCAGCGGCg -3'
miRNA:   3'- -CGAa-CGgC-UUGCAG---CUGG-UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 114146 0.69 0.889175
Target:  5'- aGCcgcgGCuCGGGCGcagCGACCGC-GCGGCc -3'
miRNA:   3'- -CGaa--CG-GCUUGCa--GCUGGUGuCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 126083 0.69 0.874927
Target:  5'- ---gGCCGuGAUcUCGGCCGuCGGCGGCa -3'
miRNA:   3'- cgaaCGGC-UUGcAGCUGGU-GUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.