miRNA display CGI


Results 121 - 140 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 3' -53.5 NC_006151.1 + 126083 0.69 0.874927
Target:  5'- ---gGCCGuGAUcUCGGCCGuCGGCGGCa -3'
miRNA:   3'- cgaaCGGC-UUGcAGCUGGU-GUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 136745 0.69 0.874927
Target:  5'- ---cGCCGAGCGUCGcgcgccucGCCcCGGCcaugGGCg -3'
miRNA:   3'- cgaaCGGCUUGCAGC--------UGGuGUCG----UCG- -5'
29384 3' -53.5 NC_006151.1 + 29590 0.68 0.91484
Target:  5'- ---cGC--GGCGgcugCGGCCGCGGCGGCg -3'
miRNA:   3'- cgaaCGgcUUGCa---GCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 55214 0.68 0.908786
Target:  5'- ---aGCCGGGCuUCGggcACCACGGCgccGGCg -3'
miRNA:   3'- cgaaCGGCUUGcAGC---UGGUGUCG---UCG- -5'
29384 3' -53.5 NC_006151.1 + 58722 0.68 0.908786
Target:  5'- aGCgcccccgUGCCGcucGCGUCGcgcagcgccgcgGCCACcGCGGCc -3'
miRNA:   3'- -CGa------ACGGCu--UGCAGC------------UGGUGuCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 69971 0.68 0.908786
Target:  5'- ---gGCCGcGCGggCG-CUGCAGCGGCg -3'
miRNA:   3'- cgaaCGGCuUGCa-GCuGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 70884 0.68 0.918932
Target:  5'- ---cGCCGAcgagaucgcgcgcuGCGUCGugCGCuGCcuGGCg -3'
miRNA:   3'- cgaaCGGCU--------------UGCAGCugGUGuCG--UCG- -5'
29384 3' -53.5 NC_006151.1 + 118197 0.68 0.91484
Target:  5'- gGCUUcGCCGGGCacgUGGCCGUGGUGGCg -3'
miRNA:   3'- -CGAA-CGGCUUGca-GCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 25288 0.68 0.91484
Target:  5'- uGCUUgGCCGcgggGACGUgGGCgaACGGguGCg -3'
miRNA:   3'- -CGAA-CGGC----UUGCAgCUGg-UGUCguCG- -5'
29384 3' -53.5 NC_006151.1 + 133476 0.68 0.91484
Target:  5'- cGCgaggcgGCCGcgGGCGUC-ACCuuGGCGGCg -3'
miRNA:   3'- -CGaa----CGGC--UUGCAGcUGGugUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 133212 0.68 0.91484
Target:  5'- cGCUUGuuGAaggcguGCGUCGcGCCGCGcCAGg -3'
miRNA:   3'- -CGAACggCU------UGCAGC-UGGUGUcGUCg -5'
29384 3' -53.5 NC_006151.1 + 94770 0.68 0.91484
Target:  5'- ---cGCCGcAGCGUCu-CCAUgAGCGGCa -3'
miRNA:   3'- cgaaCGGC-UUGCAGcuGGUG-UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 69699 0.68 0.91484
Target:  5'- ---cGUCGAugGU-GGCCgccgccggggGCAGCAGCg -3'
miRNA:   3'- cgaaCGGCUugCAgCUGG----------UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 67991 0.68 0.91484
Target:  5'- gGCccGCCG-GCGccgCGGCCACgggcucGGCGGCg -3'
miRNA:   3'- -CGaaCGGCuUGCa--GCUGGUG------UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 29959 0.68 0.91484
Target:  5'- ---gGCCGAGC-UCgGACCGCGGCGa- -3'
miRNA:   3'- cgaaCGGCUUGcAG-CUGGUGUCGUcg -5'
29384 3' -53.5 NC_006151.1 + 23144 0.68 0.91484
Target:  5'- ---cGCCGGGCccUCGGCgGgAGCGGCg -3'
miRNA:   3'- cgaaCGGCUUGc-AGCUGgUgUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 103981 0.68 0.91484
Target:  5'- gGCgaGCUGGAgG-CGGCCGUGGCGGCc -3'
miRNA:   3'- -CGaaCGGCUUgCaGCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 100195 0.68 0.91484
Target:  5'- gGCgaccUGCUGGAC-UCGaugGCCACGGCcGCg -3'
miRNA:   3'- -CGa---ACGGCUUGcAGC---UGGUGUCGuCG- -5'
29384 3' -53.5 NC_006151.1 + 128035 0.68 0.91484
Target:  5'- uGCgacGCCc-GCGgcagCGGCgGCAGCGGCg -3'
miRNA:   3'- -CGaa-CGGcuUGCa---GCUGgUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 129522 0.68 0.908786
Target:  5'- cGCUUGCCGccGACGggggggccCGgggccgccgucaACCGCAGCuGGCg -3'
miRNA:   3'- -CGAACGGC--UUGCa-------GC------------UGGUGUCG-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.