miRNA display CGI


Results 141 - 160 of 266 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 3' -53.5 NC_006151.1 + 25288 0.68 0.91484
Target:  5'- uGCUUgGCCGcgggGACGUgGGCgaACGGguGCg -3'
miRNA:   3'- -CGAA-CGGC----UUGCAgCUGg-UGUCguCG- -5'
29384 3' -53.5 NC_006151.1 + 100195 0.68 0.91484
Target:  5'- gGCgaccUGCUGGAC-UCGaugGCCACGGCcGCg -3'
miRNA:   3'- -CGa---ACGGCUUGcAGC---UGGUGUCGuCG- -5'
29384 3' -53.5 NC_006151.1 + 103981 0.68 0.91484
Target:  5'- gGCgaGCUGGAgG-CGGCCGUGGCGGCc -3'
miRNA:   3'- -CGaaCGGCUUgCaGCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 23144 0.68 0.91484
Target:  5'- ---cGCCGGGCccUCGGCgGgAGCGGCg -3'
miRNA:   3'- cgaaCGGCUUGc-AGCUGgUgUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 29959 0.68 0.91484
Target:  5'- ---gGCCGAGC-UCgGACCGCGGCGa- -3'
miRNA:   3'- cgaaCGGCUUGcAG-CUGGUGUCGUcg -5'
29384 3' -53.5 NC_006151.1 + 67991 0.68 0.91484
Target:  5'- gGCccGCCG-GCGccgCGGCCACgggcucGGCGGCg -3'
miRNA:   3'- -CGaaCGGCuUGCa--GCUGGUG------UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 69699 0.68 0.91484
Target:  5'- ---cGUCGAugGU-GGCCgccgccggggGCAGCAGCg -3'
miRNA:   3'- cgaaCGGCUugCAgCUGG----------UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 94770 0.68 0.91484
Target:  5'- ---cGCCGcAGCGUCu-CCAUgAGCGGCa -3'
miRNA:   3'- cgaaCGGC-UUGCAGcuGGUG-UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 118142 0.68 0.908786
Target:  5'- ---cGCCG-ACGaCG-CCGCGGCGGUg -3'
miRNA:   3'- cgaaCGGCuUGCaGCuGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 69971 0.68 0.908786
Target:  5'- ---gGCCGcGCGggCG-CUGCAGCGGCg -3'
miRNA:   3'- cgaaCGGCuUGCa-GCuGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 70963 0.68 0.920649
Target:  5'- cGCgugGCCGu-CGagGGCaACAGCAGCc -3'
miRNA:   3'- -CGaa-CGGCuuGCagCUGgUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 54620 0.68 0.920649
Target:  5'- ---cGCCGGGCG-CGcCCcggggggaaGCGGCGGCg -3'
miRNA:   3'- cgaaCGGCUUGCaGCuGG---------UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 129691 0.68 0.920649
Target:  5'- ---gGCCGc-CGUgGACCGCGGCgccgAGCa -3'
miRNA:   3'- cgaaCGGCuuGCAgCUGGUGUCG----UCG- -5'
29384 3' -53.5 NC_006151.1 + 57605 0.68 0.920649
Target:  5'- ---gGCCG-GCcUCGGCCGCGGCcGCc -3'
miRNA:   3'- cgaaCGGCuUGcAGCUGGUGUCGuCG- -5'
29384 3' -53.5 NC_006151.1 + 2327 0.68 0.920649
Target:  5'- aGCggggcgGCCucGGCGUCgGGCUcCAGCAGCg -3'
miRNA:   3'- -CGaa----CGGc-UUGCAG-CUGGuGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 85772 0.68 0.920079
Target:  5'- cGCUggcGCUGGACGcgcacUCGAuCCGCGcgcgcguGCAGCg -3'
miRNA:   3'- -CGAa--CGGCUUGC-----AGCU-GGUGU-------CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 70884 0.68 0.918932
Target:  5'- ---cGCCGAcgagaucgcgcgcuGCGUCGugCGCuGCcuGGCg -3'
miRNA:   3'- cgaaCGGCU--------------UGCAGCugGUGuCG--UCG- -5'
29384 3' -53.5 NC_006151.1 + 118197 0.68 0.91484
Target:  5'- gGCUUcGCCGGGCacgUGGCCGUGGUGGCg -3'
miRNA:   3'- -CGAA-CGGCUUGca-GCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 55214 0.68 0.908786
Target:  5'- ---aGCCGGGCuUCGggcACCACGGCgccGGCg -3'
miRNA:   3'- cgaaCGGCUUGcAGC---UGGUGUCG---UCG- -5'
29384 3' -53.5 NC_006151.1 + 58722 0.68 0.908786
Target:  5'- aGCgcccccgUGCCGcucGCGUCGcgcagcgccgcgGCCACcGCGGCc -3'
miRNA:   3'- -CGa------ACGGCu--UGCAGC------------UGGUGuCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.