miRNA display CGI


Results 81 - 100 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 3' -53.5 NC_006151.1 + 88463 0.7 0.843788
Target:  5'- gGCgc-CCGAGCucGUCGGCCACGGU-GCu -3'
miRNA:   3'- -CGaacGGCUUG--CAGCUGGUGUCGuCG- -5'
29384 3' -53.5 NC_006151.1 + 94251 0.7 0.851888
Target:  5'- gGCUcGCUGAGCG-CGGCCAC-GUccuuGGCg -3'
miRNA:   3'- -CGAaCGGCUUGCaGCUGGUGuCG----UCG- -5'
29384 3' -53.5 NC_006151.1 + 89261 0.7 0.851888
Target:  5'- ---cGCCGucGugGUCGACgGCGccGCGGCg -3'
miRNA:   3'- cgaaCGGC--UugCAGCUGgUGU--CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 83580 0.7 0.851888
Target:  5'- cGCggGCCcgaaGAGCGggaccaggcgCGugUGCAGCAGCa -3'
miRNA:   3'- -CGaaCGG----CUUGCa---------GCugGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 44570 0.7 0.851888
Target:  5'- cGC-UGCCGAggaGC-UCcGCUGCAGCGGCg -3'
miRNA:   3'- -CGaACGGCU---UGcAGcUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 122286 0.69 0.859002
Target:  5'- uGCUcgGCUGcgUGUgCGACCACcucacgcGGCAGCu -3'
miRNA:   3'- -CGAa-CGGCuuGCA-GCUGGUG-------UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 142984 0.69 0.859782
Target:  5'- --cUGCCGcggGugGgccCGACCGCAGCAucGCg -3'
miRNA:   3'- cgaACGGC---UugCa--GCUGGUGUCGU--CG- -5'
29384 3' -53.5 NC_006151.1 + 130837 0.69 0.859782
Target:  5'- cGCggcGCgGAGuCGUCG-CCGuCGGCGGCg -3'
miRNA:   3'- -CGaa-CGgCUU-GCAGCuGGU-GUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 79675 0.69 0.859782
Target:  5'- ---cGCCGGAuCGUCGccGCCGCGgggaccGCAGCc -3'
miRNA:   3'- cgaaCGGCUU-GCAGC--UGGUGU------CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 122431 0.69 0.859782
Target:  5'- ---cGCCGAggcccgggagGCGgaggcggCGuCCACGGCGGCg -3'
miRNA:   3'- cgaaCGGCU----------UGCa------GCuGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 68277 0.69 0.859782
Target:  5'- cGCggcGCCGGGC----GCCACGGCGGCc -3'
miRNA:   3'- -CGaa-CGGCUUGcagcUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 118842 0.69 0.865182
Target:  5'- uGCUgcccGCCG-ACGU-GACCuucacgcucuuugaGCAGCGGCg -3'
miRNA:   3'- -CGAa---CGGCuUGCAgCUGG--------------UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 128636 0.69 0.866705
Target:  5'- ---gGCgGAccacgcgcGCGUCGACCguguccaucauccACAGCAGCc -3'
miRNA:   3'- cgaaCGgCU--------UGCAGCUGG-------------UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 54097 0.69 0.867464
Target:  5'- gGCggcgGCC--AUGUCGGCUgcgACGGCGGCg -3'
miRNA:   3'- -CGaa--CGGcuUGCAGCUGG---UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 34621 0.69 0.867464
Target:  5'- cGCgagGCgCGggUGgggCGACCGCGGgGGUc -3'
miRNA:   3'- -CGaa-CG-GCuuGCa--GCUGGUGUCgUCG- -5'
29384 3' -53.5 NC_006151.1 + 90642 0.69 0.867464
Target:  5'- cGCUUGgCGAugGgCGugUACAugcgcgggGCGGCg -3'
miRNA:   3'- -CGAACgGCUugCaGCugGUGU--------CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 67538 0.69 0.867464
Target:  5'- cGCcaGCCGGcguCGUUGACCACcacGUGGCg -3'
miRNA:   3'- -CGaaCGGCUu--GCAGCUGGUGu--CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 126083 0.69 0.874927
Target:  5'- ---gGCCGuGAUcUCGGCCGuCGGCGGCa -3'
miRNA:   3'- cgaaCGGC-UUGcAGCUGGU-GUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 136745 0.69 0.874927
Target:  5'- ---cGCCGAGCGUCGcgcgccucGCCcCGGCcaugGGCg -3'
miRNA:   3'- cgaaCGGCUUGCAGC--------UGGuGUCG----UCG- -5'
29384 3' -53.5 NC_006151.1 + 99166 0.69 0.874927
Target:  5'- ---cGCCGcgGACcUCGACCACAcGCAGg -3'
miRNA:   3'- cgaaCGGC--UUGcAGCUGGUGU-CGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.