miRNA display CGI


Results 121 - 140 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 3' -53.5 NC_006151.1 + 98202 0.69 0.889175
Target:  5'- ---cGCCGcGCGgggucgaGugCGCGGCGGCg -3'
miRNA:   3'- cgaaCGGCuUGCag-----CugGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 2463 0.69 0.889175
Target:  5'- ---cGCCGAGCccccagcgGUUGGCCGCgcggugcccgaaGGCGGCg -3'
miRNA:   3'- cgaaCGGCUUG--------CAGCUGGUG------------UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 6135 0.68 0.895284
Target:  5'- gGCUccgGCCGcggccgcgaggacGGCGgccUCGGCCuCGGCGGCg -3'
miRNA:   3'- -CGAa--CGGC-------------UUGC---AGCUGGuGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 131898 0.68 0.895951
Target:  5'- ---gGCCGAGgG-CGACgGgGGCGGCa -3'
miRNA:   3'- cgaaCGGCUUgCaGCUGgUgUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 44645 0.68 0.895951
Target:  5'- ---cGCUGAuacucUUGGCCGCGGCAGCc -3'
miRNA:   3'- cgaaCGGCUugc--AGCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 96738 0.68 0.895951
Target:  5'- gGCggGCgCGAcgACGgaGGCCAUGGCGGCg -3'
miRNA:   3'- -CGaaCG-GCU--UGCagCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 96610 0.68 0.895951
Target:  5'- gGCgcGCCG-ACGUCGugCccgaggGCGcGCAGCg -3'
miRNA:   3'- -CGaaCGGCuUGCAGCugG------UGU-CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 21587 0.68 0.895951
Target:  5'- cGCgggGUCGAugGCGUaCGGCgugGCGGCGGCg -3'
miRNA:   3'- -CGaa-CGGCU--UGCA-GCUGg--UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 62505 0.68 0.902489
Target:  5'- ---gGCgCGGACGaCGGCC-CGGCGGUa -3'
miRNA:   3'- cgaaCG-GCUUGCaGCUGGuGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 89468 0.68 0.902489
Target:  5'- aGCaggGCCc-GCGUcaCGugCGCGGCGGCg -3'
miRNA:   3'- -CGaa-CGGcuUGCA--GCugGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 91484 0.68 0.902489
Target:  5'- uGCUcGCCGcgcACGcuggCGugCAcCAGCAGCc -3'
miRNA:   3'- -CGAaCGGCu--UGCa---GCugGU-GUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 98272 0.68 0.902489
Target:  5'- cGCUcgaggagGCCGAccacgcCGUCG-CCACGGUGGUg -3'
miRNA:   3'- -CGAa------CGGCUu-----GCAGCuGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 97808 0.68 0.902489
Target:  5'- cGCgcgGCCGuGCGcCGGUCGCGGUAGUu -3'
miRNA:   3'- -CGaa-CGGCuUGCaGCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 104257 0.68 0.902489
Target:  5'- --cUGCCcgaGAACGcCGG-CGCGGCGGCg -3'
miRNA:   3'- cgaACGG---CUUGCaGCUgGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 117264 0.68 0.902489
Target:  5'- cGCggGCCGcGCG-CGGCCGCcGCcgacAGCg -3'
miRNA:   3'- -CGaaCGGCuUGCaGCUGGUGuCG----UCG- -5'
29384 3' -53.5 NC_006151.1 + 133606 0.68 0.902489
Target:  5'- cGUagGCCGAgggGCGUCuGGgggUCGCGGCGGCc -3'
miRNA:   3'- -CGaaCGGCU---UGCAG-CU---GGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 56380 0.68 0.902489
Target:  5'- cGCcUGCUGcACGUCGgcGCCACGcGCGcGCu -3'
miRNA:   3'- -CGaACGGCuUGCAGC--UGGUGU-CGU-CG- -5'
29384 3' -53.5 NC_006151.1 + 121007 0.68 0.902489
Target:  5'- cGUgUGCCcccuGAugGUguuUGACCGCAcGCGGCa -3'
miRNA:   3'- -CGaACGG----CUugCA---GCUGGUGU-CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 55214 0.68 0.908786
Target:  5'- ---aGCCGGGCuUCGggcACCACGGCgccGGCg -3'
miRNA:   3'- cgaaCGGCUUGcAGC---UGGUGUCG---UCG- -5'
29384 3' -53.5 NC_006151.1 + 58722 0.68 0.908786
Target:  5'- aGCgcccccgUGCCGcucGCGUCGcgcagcgccgcgGCCACcGCGGCc -3'
miRNA:   3'- -CGa------ACGGCu--UGCAGC------------UGGUGuCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.