miRNA display CGI


Results 61 - 80 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 3' -53.5 NC_006151.1 + 52820 0.72 0.733491
Target:  5'- ---gGCCG-GCGUUGGCCGCgAGcCAGCg -3'
miRNA:   3'- cgaaCGGCuUGCAGCUGGUG-UC-GUCG- -5'
29384 3' -53.5 NC_006151.1 + 53136 0.69 0.882166
Target:  5'- aGCUcGCCGAAC-UCGuacuCC-UGGCAGCg -3'
miRNA:   3'- -CGAaCGGCUUGcAGCu---GGuGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 53367 0.66 0.968517
Target:  5'- uGCgucgUGUCGuacgcGGCGUUGAUCAgccacCAGCAGUa -3'
miRNA:   3'- -CGa---ACGGC-----UUGCAGCUGGU-----GUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 54097 0.69 0.867464
Target:  5'- gGCggcgGCC--AUGUCGGCUgcgACGGCGGCg -3'
miRNA:   3'- -CGaa--CGGcuUGCAGCUGG---UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 54620 0.68 0.920649
Target:  5'- ---cGCCGGGCG-CGcCCcggggggaaGCGGCGGCg -3'
miRNA:   3'- cgaaCGGCUUGCaGCuGG---------UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 54738 0.72 0.717437
Target:  5'- aGCUcGCCGAggccaugcgcgGCGUcaccaucauggacuaCGACCGCGuGCAGCu -3'
miRNA:   3'- -CGAaCGGCU-----------UGCA---------------GCUGGUGU-CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 55073 0.66 0.958291
Target:  5'- ---cGgCGGGC-UCGGCCGCGGCGcGCc -3'
miRNA:   3'- cgaaCgGCUUGcAGCUGGUGUCGU-CG- -5'
29384 3' -53.5 NC_006151.1 + 55214 0.68 0.908786
Target:  5'- ---aGCCGGGCuUCGggcACCACGGCgccGGCg -3'
miRNA:   3'- cgaaCGGCUUGcAGC---UGGUGUCG---UCG- -5'
29384 3' -53.5 NC_006151.1 + 56380 0.68 0.902489
Target:  5'- cGCcUGCUGcACGUCGgcGCCACGcGCGcGCu -3'
miRNA:   3'- -CGaACGGCuUGCAGC--UGGUGU-CGU-CG- -5'
29384 3' -53.5 NC_006151.1 + 57447 0.71 0.77252
Target:  5'- cGCggcgGCCcccGCGUCGGCCaggugccgcgccGCGGCGGCc -3'
miRNA:   3'- -CGaa--CGGcu-UGCAGCUGG------------UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 57494 0.72 0.752249
Target:  5'- ---aGgCGAcgcgcacGCGcUCGGCCGCGGCGGCg -3'
miRNA:   3'- cgaaCgGCU-------UGC-AGCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 57605 0.68 0.920649
Target:  5'- ---gGCCG-GCcUCGGCCGCGGCcGCc -3'
miRNA:   3'- cgaaCGGCuUGcAGCUGGUGUCGuCG- -5'
29384 3' -53.5 NC_006151.1 + 57724 0.67 0.950331
Target:  5'- gGCUUGaCCGcGCG-CGcCCGCA-CGGCg -3'
miRNA:   3'- -CGAAC-GGCuUGCaGCuGGUGUcGUCG- -5'
29384 3' -53.5 NC_006151.1 + 57879 0.65 0.97062
Target:  5'- ---cGCCGGcagACGUCGcagcgcaggcgcagGCCGCAGCucacgGGCc -3'
miRNA:   3'- cgaaCGGCU---UGCAGC--------------UGGUGUCG-----UCG- -5'
29384 3' -53.5 NC_006151.1 + 57940 0.71 0.800467
Target:  5'- cGCggaaGCCGAGCG-CgGGCCACAGCccguccgugAGCc -3'
miRNA:   3'- -CGaa--CGGCUUGCaG-CUGGUGUCG---------UCG- -5'
29384 3' -53.5 NC_006151.1 + 58141 0.66 0.968517
Target:  5'- ---cGCCGuACG-CGGCCGCgugccaccGGCGGUa -3'
miRNA:   3'- cgaaCGGCuUGCaGCUGGUG--------UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 58722 0.68 0.908786
Target:  5'- aGCgcccccgUGCCGcucGCGUCGcgcagcgccgcgGCCACcGCGGCc -3'
miRNA:   3'- -CGa------ACGGCu--UGCAGC------------UGGUGuCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 59162 0.71 0.77252
Target:  5'- ---gGCCG-GCGUCG--CGCAGCAGCg -3'
miRNA:   3'- cgaaCGGCuUGCAGCugGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 59374 0.66 0.963313
Target:  5'- cGCgcgGCCGu-CGUCGcguccagcacguggcACCgcagcaccucgaGCAGCAGCg -3'
miRNA:   3'- -CGaa-CGGCuuGCAGC---------------UGG------------UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 59430 0.68 0.92621
Target:  5'- cGCcaGCUcGGCGUCGGCCGCcGCcGCc -3'
miRNA:   3'- -CGaaCGGcUUGCAGCUGGUGuCGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.