miRNA display CGI


Results 101 - 120 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 3' -53.5 NC_006151.1 + 68277 0.69 0.859782
Target:  5'- cGCggcGCCGGGC----GCCACGGCGGCc -3'
miRNA:   3'- -CGaa-CGGCUUGcagcUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 68627 0.68 0.92621
Target:  5'- cGCgaacUGcCCGcGCGUCGccggcuccacuGCCACGGcCGGCg -3'
miRNA:   3'- -CGa---AC-GGCuUGCAGC-----------UGGUGUC-GUCG- -5'
29384 3' -53.5 NC_006151.1 + 68957 0.65 0.97062
Target:  5'- gGCUcGCggcgcacggacucgCGGACGcCGGCCAgCAGCGcGCg -3'
miRNA:   3'- -CGAaCG--------------GCUUGCaGCUGGU-GUCGU-CG- -5'
29384 3' -53.5 NC_006151.1 + 69035 0.69 0.889175
Target:  5'- aGCUccGCgGuGGCGUCaaaGACCgGCAGCGGCg -3'
miRNA:   3'- -CGAa-CGgC-UUGCAG---CUGG-UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 69586 0.71 0.800467
Target:  5'- ---cGCCGcGACGagcUCGGCCGC-GCGGCg -3'
miRNA:   3'- cgaaCGGC-UUGC---AGCUGGUGuCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 69699 0.68 0.91484
Target:  5'- ---cGUCGAugGU-GGCCgccgccggggGCAGCAGCg -3'
miRNA:   3'- cgaaCGGCUugCAgCUGG----------UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 69971 0.68 0.908786
Target:  5'- ---gGCCGcGCGggCG-CUGCAGCGGCg -3'
miRNA:   3'- cgaaCGGCuUGCa-GCuGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 70884 0.68 0.918932
Target:  5'- ---cGCCGAcgagaucgcgcgcuGCGUCGugCGCuGCcuGGCg -3'
miRNA:   3'- cgaaCGGCU--------------UGCAGCugGUGuCG--UCG- -5'
29384 3' -53.5 NC_006151.1 + 70963 0.68 0.920649
Target:  5'- cGCgugGCCGu-CGagGGCaACAGCAGCc -3'
miRNA:   3'- -CGaa-CGGCuuGCagCUGgUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 71687 0.71 0.781978
Target:  5'- cGCgUGCCGAGCGugUCG-CC-CAGCcGCg -3'
miRNA:   3'- -CGaACGGCUUGC--AGCuGGuGUCGuCG- -5'
29384 3' -53.5 NC_006151.1 + 71759 0.71 0.809481
Target:  5'- ---cGCCGcGCGUgGuCCuGCGGCAGCg -3'
miRNA:   3'- cgaaCGGCuUGCAgCuGG-UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 72154 0.66 0.961924
Target:  5'- ---aGCCGcaggcacuCGUCG-CCgaGCAGCGGCg -3'
miRNA:   3'- cgaaCGGCuu------GCAGCuGG--UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 72266 0.7 0.818328
Target:  5'- ---cGCCGAGCGgcgUGGCCAgCAuGCGGUg -3'
miRNA:   3'- cgaaCGGCUUGCa--GCUGGU-GU-CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 72336 0.7 0.827
Target:  5'- aGCcaugGCCGcgagcACGUCGccGCCGCagGGCAGCg -3'
miRNA:   3'- -CGaa--CGGCu----UGCAGC--UGGUG--UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 72753 0.73 0.662061
Target:  5'- ---cGCCGAGuCGcUGGCgCACAGCGGCg -3'
miRNA:   3'- cgaaCGGCUU-GCaGCUG-GUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 72838 0.67 0.936593
Target:  5'- cGCUUGaacugguacucCCGuugcuCGUCGGCgagGCGGCGGCg -3'
miRNA:   3'- -CGAAC-----------GGCuu---GCAGCUGg--UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 73272 0.73 0.672414
Target:  5'- cGgUUGCCG-GCGUUGACCgu-GCGGCg -3'
miRNA:   3'- -CgAACGGCuUGCAGCUGGuguCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 74425 0.66 0.968517
Target:  5'- --gUGCUGAAagugcgcgcCGUUGACgCGCAGCuccGGCa -3'
miRNA:   3'- cgaACGGCUU---------GCAGCUG-GUGUCG---UCG- -5'
29384 3' -53.5 NC_006151.1 + 75105 0.74 0.64129
Target:  5'- gGCgUUGCCGGGCGccagcagcuggUCGGCgGcCGGCGGCg -3'
miRNA:   3'- -CG-AACGGCUUGC-----------AGCUGgU-GUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 75218 0.7 0.818328
Target:  5'- ---cGUCGGggcgcGCGUCGGCCACGuaGGCg -3'
miRNA:   3'- cgaaCGGCU-----UGCAGCUGGUGUcgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.