miRNA display CGI


Results 121 - 140 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 3' -53.5 NC_006151.1 + 75640 0.72 0.723482
Target:  5'- gGCUUGCCGu-CGUCGggggccggcucGCCGCcgAGCAGg -3'
miRNA:   3'- -CGAACGGCuuGCAGC-----------UGGUG--UCGUCg -5'
29384 3' -53.5 NC_006151.1 + 76325 0.66 0.961924
Target:  5'- --gUGCaCGGGCugGUCGGCCGgGuGCGGCc -3'
miRNA:   3'- cgaACG-GCUUG--CAGCUGGUgU-CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 77525 0.68 0.920649
Target:  5'- cGCgccucgGCCGcGCGUgGGCCGCcccGCAGg -3'
miRNA:   3'- -CGaa----CGGCuUGCAgCUGGUGu--CGUCg -5'
29384 3' -53.5 NC_006151.1 + 78695 0.66 0.961924
Target:  5'- cGCcgGCCGGGgccuCGUCG-CCGCGaCGGCg -3'
miRNA:   3'- -CGaaCGGCUU----GCAGCuGGUGUcGUCG- -5'
29384 3' -53.5 NC_006151.1 + 79675 0.69 0.859782
Target:  5'- ---cGCCGGAuCGUCGccGCCGCGgggaccGCAGCc -3'
miRNA:   3'- cgaaCGGCUU-GCAGC--UGGUGU------CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 80909 0.67 0.936593
Target:  5'- ---gGCCuuGACGUCG-CCGCcguGCAGCg -3'
miRNA:   3'- cgaaCGGc-UUGCAGCuGGUGu--CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 81190 0.7 0.818328
Target:  5'- ---cGCCGAGCGUguacgccgGGCCGCAGUccgGGCg -3'
miRNA:   3'- cgaaCGGCUUGCAg-------CUGGUGUCG---UCG- -5'
29384 3' -53.5 NC_006151.1 + 81383 0.66 0.96533
Target:  5'- cGCgaGCCGcGCcgcggcgcccagGUUGGCCAgGGUGGCg -3'
miRNA:   3'- -CGaaCGGCuUG------------CAGCUGGUgUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 81513 0.73 0.662061
Target:  5'- aGCgcgGCCcgcguGAGCucggCGGCCGCGGCGGCg -3'
miRNA:   3'- -CGaa-CGG-----CUUGca--GCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 81593 0.75 0.558548
Target:  5'- cGCgucGCCGGGgcCGcCGGCgCGCAGCAGCa -3'
miRNA:   3'- -CGaa-CGGCUU--GCaGCUG-GUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 82251 0.69 0.87785
Target:  5'- cGCgcagGCCGAggaaggccucgcccaGCGUcacguugaagaCGGCCGCggGGCAGCg -3'
miRNA:   3'- -CGaa--CGGCU---------------UGCA-----------GCUGGUG--UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 82377 0.67 0.950331
Target:  5'- ---cGCCGGgcGCGUCGaagGCCACgAGCuccGCg -3'
miRNA:   3'- cgaaCGGCU--UGCAGC---UGGUG-UCGu--CG- -5'
29384 3' -53.5 NC_006151.1 + 82981 0.7 0.818328
Target:  5'- --aUGCCGcGCGUCugcgccGCCACGGCcGCg -3'
miRNA:   3'- cgaACGGCuUGCAGc-----UGGUGUCGuCG- -5'
29384 3' -53.5 NC_006151.1 + 83023 0.66 0.958291
Target:  5'- gGCgaggGCCccAgGUCGACgguggagacgCGCAGCGGCa -3'
miRNA:   3'- -CGaa--CGGcuUgCAGCUG----------GUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 83363 0.66 0.954429
Target:  5'- cGCgcGCgCGGGCG-CGcaggcGCCGCAGguGCu -3'
miRNA:   3'- -CGaaCG-GCUUGCaGC-----UGGUGUCguCG- -5'
29384 3' -53.5 NC_006151.1 + 83580 0.7 0.851888
Target:  5'- cGCggGCCcgaaGAGCGggaccaggcgCGugUGCAGCAGCa -3'
miRNA:   3'- -CGaaCGG----CUUGCa---------GCugGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 84344 0.74 0.620489
Target:  5'- ---cGCCGAguACGUCGccggcCCGCGGCGGUg -3'
miRNA:   3'- cgaaCGGCU--UGCAGCu----GGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 84613 0.72 0.743409
Target:  5'- cGCgcGCCGccGCG-CGGCCGCcGCGGCg -3'
miRNA:   3'- -CGaaCGGCu-UGCaGCUGGUGuCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 84788 0.71 0.791297
Target:  5'- cGCgccGCCGAggagGCGcccgaggCGACCGCGGCcGCg -3'
miRNA:   3'- -CGaa-CGGCU----UGCa------GCUGGUGUCGuCG- -5'
29384 3' -53.5 NC_006151.1 + 85030 0.67 0.945994
Target:  5'- cGCaUGUCGcgcaccuucaugGGCGUgaCGACCACGGCGcuGCa -3'
miRNA:   3'- -CGaACGGC------------UUGCA--GCUGGUGUCGU--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.