miRNA display CGI


Results 101 - 120 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 3' -53.5 NC_006151.1 + 96865 0.69 0.882166
Target:  5'- cGCccGCCGGGCG-CGGCgcgCGCGGgGGCa -3'
miRNA:   3'- -CGaaCGGCUUGCaGCUG---GUGUCgUCG- -5'
29384 3' -53.5 NC_006151.1 + 96738 0.68 0.895951
Target:  5'- gGCggGCgCGAcgACGgaGGCCAUGGCGGCg -3'
miRNA:   3'- -CGaaCG-GCU--UGCagCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 96610 0.68 0.895951
Target:  5'- gGCgcGCCG-ACGUCGugCccgaggGCGcGCAGCg -3'
miRNA:   3'- -CGaaCGGCuUGCAGCugG------UGU-CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 96390 0.66 0.96533
Target:  5'- cGCgcggUGCCGGcgcACGgCGGCCGCcaccGCGGg -3'
miRNA:   3'- -CGa---ACGGCU---UGCaGCUGGUGu---CGUCg -5'
29384 3' -53.5 NC_006151.1 + 96211 0.73 0.672414
Target:  5'- cGCgucGCCGuGGCGgCGGCCGCGGCgaGGCg -3'
miRNA:   3'- -CGaa-CGGC-UUGCaGCUGGUGUCG--UCG- -5'
29384 3' -53.5 NC_006151.1 + 94770 0.68 0.91484
Target:  5'- ---cGCCGcAGCGUCu-CCAUgAGCGGCa -3'
miRNA:   3'- cgaaCGGC-UUGCAGcuGGUG-UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 94251 0.7 0.851888
Target:  5'- gGCUcGCUGAGCG-CGGCCAC-GUccuuGGCg -3'
miRNA:   3'- -CGAaCGGCUUGCaGCUGGUGuCG----UCG- -5'
29384 3' -53.5 NC_006151.1 + 94045 0.72 0.713392
Target:  5'- cGCgcGCCGcGGCGUCG-CCGCGGaaCAGCa -3'
miRNA:   3'- -CGaaCGGC-UUGCAGCuGGUGUC--GUCG- -5'
29384 3' -53.5 NC_006151.1 + 92539 0.78 0.414354
Target:  5'- ---cGCCGGACGUgGACuCGguGCAGCa -3'
miRNA:   3'- cgaaCGGCUUGCAgCUG-GUguCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 92198 0.67 0.931525
Target:  5'- ---cGCCGAcGCGcCG-CCGCGGCcGCg -3'
miRNA:   3'- cgaaCGGCU-UGCaGCuGGUGUCGuCG- -5'
29384 3' -53.5 NC_006151.1 + 91484 0.68 0.902489
Target:  5'- uGCUcGCCGcgcACGcuggCGugCAcCAGCAGCc -3'
miRNA:   3'- -CGAaCGGCu--UGCa---GCugGU-GUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 91111 0.7 0.827
Target:  5'- ---gGCCGcGGCGcccuUCG-CCACGGCGGCg -3'
miRNA:   3'- cgaaCGGC-UUGC----AGCuGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 90870 0.66 0.967584
Target:  5'- ---aGuuGAACGUgagcucggcguuccCGGCCcgcagccgcuGCAGCAGCg -3'
miRNA:   3'- cgaaCggCUUGCA--------------GCUGG----------UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 90642 0.69 0.867464
Target:  5'- cGCUUGgCGAugGgCGugUACAugcgcgggGCGGCg -3'
miRNA:   3'- -CGAACgGCUugCaGCugGUGU--------CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 90224 0.67 0.951998
Target:  5'- cGCcgGCCGAgaucGCGUCGcggcuggccagcGCCcagcccgcggcgaagACGGCGGCg -3'
miRNA:   3'- -CGaaCGGCU----UGCAGC------------UGG---------------UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 89719 0.71 0.762933
Target:  5'- gGCggcGCCGGcCG-CGGCCGCGGUGGUg -3'
miRNA:   3'- -CGaa-CGGCUuGCaGCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 89468 0.68 0.902489
Target:  5'- aGCaggGCCc-GCGUcaCGugCGCGGCGGCg -3'
miRNA:   3'- -CGaa-CGGcuUGCA--GCugGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 89261 0.7 0.851888
Target:  5'- ---cGCCGucGugGUCGACgGCGccGCGGCg -3'
miRNA:   3'- cgaaCGGC--UugCAGCUGgUGU--CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 88910 0.7 0.83549
Target:  5'- gGCgucgGgCGAGCGgaagCGcCCGCGGCGGUa -3'
miRNA:   3'- -CGaa--CgGCUUGCa---GCuGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 88463 0.7 0.843788
Target:  5'- gGCgc-CCGAGCucGUCGGCCACGGU-GCu -3'
miRNA:   3'- -CGaacGGCUUG--CAGCUGGUGUCGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.