Results 101 - 120 of 266 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29384 | 3' | -53.5 | NC_006151.1 | + | 38383 | 0.67 | 0.950331 |
Target: 5'- ---cGCCG-GCGcCGGCgGCGGCGGg -3' miRNA: 3'- cgaaCGGCuUGCaGCUGgUGUCGUCg -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 102769 | 0.67 | 0.950331 |
Target: 5'- aGCUggcGCUGAugGUCGGcgacgccuCCGCGaguacuuucugcGCGGCg -3' miRNA: 3'- -CGAa--CGGCUugCAGCU--------GGUGU------------CGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 87388 | 0.67 | 0.950331 |
Target: 5'- ---cGCCcaGGugGUC--CCGCAGCAGCc -3' miRNA: 3'- cgaaCGG--CUugCAGcuGGUGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 3984 | 0.67 | 0.950331 |
Target: 5'- gGCgaGCCGGccgcggccACGUUGGCCGgGGCGa- -3' miRNA: 3'- -CGaaCGGCU--------UGCAGCUGGUgUCGUcg -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 5024 | 0.67 | 0.950331 |
Target: 5'- gGCUccgggGCCGGGgcCGgggaGGCCGCGGCGGa -3' miRNA: 3'- -CGAa----CGGCUU--GCag--CUGGUGUCGUCg -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 90224 | 0.67 | 0.951998 |
Target: 5'- cGCcgGCCGAgaucGCGUCGcggcuggccagcGCCcagcccgcggcgaagACGGCGGCg -3' miRNA: 3'- -CGaaCGGCU----UGCAGC------------UGG---------------UGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 12667 | 0.66 | 0.954429 |
Target: 5'- ---cGCCGc-CG-CGGCCGCAGCcGCc -3' miRNA: 3'- cgaaCGGCuuGCaGCUGGUGUCGuCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 103623 | 0.66 | 0.958291 |
Target: 5'- cGCacGCCG-ACG-CGGugGCGGCGGCg -3' miRNA: 3'- -CGaaCGGCuUGCaGCUggUGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 106212 | 0.66 | 0.958291 |
Target: 5'- gGCUcGCCcuccccgaccuGAugGU-GGCCGCGGUGGCc -3' miRNA: 3'- -CGAaCGG-----------CUugCAgCUGGUGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 97165 | 0.66 | 0.958291 |
Target: 5'- ---aGCCGcAGCGcUCGGCC-CGGC-GCa -3' miRNA: 3'- cgaaCGGC-UUGC-AGCUGGuGUCGuCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 83023 | 0.66 | 0.958291 |
Target: 5'- gGCgaggGCCccAgGUCGACgguggagacgCGCAGCGGCa -3' miRNA: 3'- -CGaa--CGGcuUgCAGCUG----------GUGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 55073 | 0.66 | 0.958291 |
Target: 5'- ---cGgCGGGC-UCGGCCGCGGCGcGCc -3' miRNA: 3'- cgaaCgGCUUGcAGCUGGUGUCGU-CG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 5528 | 0.66 | 0.958291 |
Target: 5'- aGCg-GCCGAGgaUCGAgccgccUCGCGGCGGCg -3' miRNA: 3'- -CGaaCGGCUUgcAGCU------GGUGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 99902 | 0.66 | 0.954429 |
Target: 5'- cGCaggUGCUGAcguggGCGcgCGACUACGGCgccGGCc -3' miRNA: 3'- -CGa--ACGGCU-----UGCa-GCUGGUGUCG---UCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 83363 | 0.66 | 0.954429 |
Target: 5'- cGCgcGCgCGGGCG-CGcaggcGCCGCAGguGCu -3' miRNA: 3'- -CGaaCG-GCUUGCaGC-----UGGUGUCguCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 106514 | 0.66 | 0.954429 |
Target: 5'- cGCgccgUGCCGGGCGcgcUGGCCACcuucaccgugcuGGCGcGCa -3' miRNA: 3'- -CGa---ACGGCUUGCa--GCUGGUG------------UCGU-CG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 105663 | 0.66 | 0.954429 |
Target: 5'- cGCcUGCaguucuACG-CGGCCuACGGCGGCg -3' miRNA: 3'- -CGaACGgcu---UGCaGCUGG-UGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 118620 | 0.66 | 0.954429 |
Target: 5'- --aUGCCGGACGUCaACCgGCucGUGGCc -3' miRNA: 3'- cgaACGGCUUGCAGcUGG-UGu-CGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 97549 | 0.66 | 0.954429 |
Target: 5'- aGCggagGCCGu-CGUCG-CCGCcgaggcGCAGCu -3' miRNA: 3'- -CGaa--CGGCuuGCAGCuGGUGu-----CGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 64614 | 0.66 | 0.954429 |
Target: 5'- aGCggcGCCGcgcCGcCGGCCGCGgggcGCGGCg -3' miRNA: 3'- -CGaa-CGGCuu-GCaGCUGGUGU----CGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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