miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 3' -53.5 NC_006151.1 + 128874 1.15 0.002094
Target:  5'- gGCUUGCCGAACGUCGACCACAGCAGCa -3'
miRNA:   3'- -CGAACGGCUUGCAGCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 6266 0.82 0.235966
Target:  5'- ---gGCCGGACGcgaugcccucuuccUCGGCCGCGGCGGCg -3'
miRNA:   3'- cgaaCGGCUUGC--------------AGCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 97989 0.82 0.243627
Target:  5'- uCUUGCCGGGCGgcgUGGCCGCguaGGCGGCg -3'
miRNA:   3'- cGAACGGCUUGCa--GCUGGUG---UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 116389 0.82 0.255815
Target:  5'- cGCUcGCCGAGCGccuccUCGGCCACGGCguugAGCu -3'
miRNA:   3'- -CGAaCGGCUUGC-----AGCUGGUGUCG----UCG- -5'
29384 3' -53.5 NC_006151.1 + 130424 0.78 0.39687
Target:  5'- gGCgcGCCGAcCGUCGAggaCUGCAGCGGCg -3'
miRNA:   3'- -CGaaCGGCUuGCAGCU---GGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 92539 0.78 0.414354
Target:  5'- ---cGCCGGACGUgGACuCGguGCAGCa -3'
miRNA:   3'- cgaaCGGCUUGCAgCUG-GUguCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 117396 0.77 0.469517
Target:  5'- cGCUUGCCGcaGGCGcUGAgCCcCAGCAGCg -3'
miRNA:   3'- -CGAACGGC--UUGCaGCU-GGuGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 37386 0.76 0.518207
Target:  5'- ---gGCCGAcggccGCGUCcGCUACGGCGGCg -3'
miRNA:   3'- cgaaCGGCU-----UGCAGcUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 133331 0.76 0.518207
Target:  5'- gGCgcGCCGGGCGgcCGGuuCCGCGGCGGCg -3'
miRNA:   3'- -CGaaCGGCUUGCa-GCU--GGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 5233 0.76 0.538248
Target:  5'- ---gGCCGAGCGcCGcGCgGCGGCGGCg -3'
miRNA:   3'- cgaaCGGCUUGCaGC-UGgUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 115656 0.75 0.558548
Target:  5'- cGCg-GCCGAugGUCG-UCACGGUGGCc -3'
miRNA:   3'- -CGaaCGGCUugCAGCuGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 81593 0.75 0.558548
Target:  5'- cGCgucGCCGGGgcCGcCGGCgCGCAGCAGCa -3'
miRNA:   3'- -CGaa-CGGCUU--GCaGCUG-GUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 11226 0.75 0.579057
Target:  5'- gGCUUcucCCGGgccGCGagGGCCGCGGCGGCg -3'
miRNA:   3'- -CGAAc--GGCU---UGCagCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 105510 0.74 0.599724
Target:  5'- --gUGCgCGAGC-UCGACCGCauGGCGGCg -3'
miRNA:   3'- cgaACG-GCUUGcAGCUGGUG--UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 141616 0.74 0.599724
Target:  5'- gGC-UGCCGGgaucgggcGgGUCGcuGCCGCGGCGGCg -3'
miRNA:   3'- -CGaACGGCU--------UgCAGC--UGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 22314 0.74 0.605946
Target:  5'- ---cGCCGAGCGUCGuccgggcgaccagcGCCGCcaauagcgcugcgAGCAGCa -3'
miRNA:   3'- cgaaCGGCUUGCAGC--------------UGGUG-------------UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 116278 0.74 0.610098
Target:  5'- aGCUUGCCcacGAGCGcCGAguccugcaCGCAGUAGCg -3'
miRNA:   3'- -CGAACGG---CUUGCaGCUg-------GUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 84344 0.74 0.620489
Target:  5'- ---cGCCGAguACGUCGccggcCCGCGGCGGUg -3'
miRNA:   3'- cgaaCGGCU--UGCAGCu----GGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 20723 0.74 0.64129
Target:  5'- gGCgggGCCGGGCGcgaGACgaACAGCAGCc -3'
miRNA:   3'- -CGaa-CGGCUUGCag-CUGg-UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 50605 0.74 0.64129
Target:  5'- aGCggGCCccGCGcCG-CCGCGGCAGCg -3'
miRNA:   3'- -CGaaCGGcuUGCaGCuGGUGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.