miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 3' -53.5 NC_006151.1 + 650 0.66 0.96533
Target:  5'- gGCUUcCgGGGCG-CGGCCGgGGCGGg -3'
miRNA:   3'- -CGAAcGgCUUGCaGCUGGUgUCGUCg -5'
29384 3' -53.5 NC_006151.1 + 2115 0.69 0.874927
Target:  5'- cGCgggGCCGGcCGUCG-CCGCcGCGGa -3'
miRNA:   3'- -CGaa-CGGCUuGCAGCuGGUGuCGUCg -5'
29384 3' -53.5 NC_006151.1 + 2203 0.67 0.945994
Target:  5'- cGCggGCCGGugGgucuccacggCGcCCcCGGCGGCg -3'
miRNA:   3'- -CGaaCGGCUugCa---------GCuGGuGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 2276 0.73 0.682732
Target:  5'- aGCacgGCCG-GCGgggCGcCCGCGGCGGCg -3'
miRNA:   3'- -CGaa-CGGCuUGCa--GCuGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 2327 0.68 0.920649
Target:  5'- aGCggggcgGCCucGGCGUCgGGCUcCAGCAGCg -3'
miRNA:   3'- -CGaa----CGGc-UUGCAG-CUGGuGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 2463 0.69 0.889175
Target:  5'- ---cGCCGAGCccccagcgGUUGGCCGCgcggugcccgaaGGCGGCg -3'
miRNA:   3'- cgaaCGGCUUG--------CAGCUGGUG------------UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 3102 0.66 0.961924
Target:  5'- ---cGCCGAGa---GGCCGCcGCGGCg -3'
miRNA:   3'- cgaaCGGCUUgcagCUGGUGuCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 3248 0.69 0.882166
Target:  5'- cGCggcgGCgGAGCGgggCG-CCGCGGCGcGCg -3'
miRNA:   3'- -CGaa--CGgCUUGCa--GCuGGUGUCGU-CG- -5'
29384 3' -53.5 NC_006151.1 + 3984 0.67 0.950331
Target:  5'- gGCgaGCCGGccgcggccACGUUGGCCGgGGCGa- -3'
miRNA:   3'- -CGaaCGGCU--------UGCAGCUGGUgUCGUcg -5'
29384 3' -53.5 NC_006151.1 + 4311 0.67 0.931005
Target:  5'- aGCUcGCgGGGCacgCGGCCgggcugcGCGGCGGCg -3'
miRNA:   3'- -CGAaCGgCUUGca-GCUGG-------UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 5024 0.67 0.950331
Target:  5'- gGCUccgggGCCGGGgcCGgggaGGCCGCGGCGGa -3'
miRNA:   3'- -CGAa----CGGCUU--GCag--CUGGUGUCGUCg -5'
29384 3' -53.5 NC_006151.1 + 5065 0.68 0.92621
Target:  5'- gGCggaggagGCCGAgggccGCGg-GGCCGCGGCGGg -3'
miRNA:   3'- -CGaa-----CGGCU-----UGCagCUGGUGUCGUCg -5'
29384 3' -53.5 NC_006151.1 + 5233 0.76 0.538248
Target:  5'- ---gGCCGAGCGcCGcGCgGCGGCGGCg -3'
miRNA:   3'- cgaaCGGCUUGCaGC-UGgUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 5322 0.72 0.743409
Target:  5'- aGC-UGCUGAAgcCG-CGGCCGCGGCGGa -3'
miRNA:   3'- -CGaACGGCUU--GCaGCUGGUGUCGUCg -5'
29384 3' -53.5 NC_006151.1 + 5528 0.66 0.958291
Target:  5'- aGCg-GCCGAGgaUCGAgccgccUCGCGGCGGCg -3'
miRNA:   3'- -CGaaCGGCUUgcAGCU------GGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 5637 0.72 0.753226
Target:  5'- ---cGCCGGGCGccgagacCGGCC-CGGCGGCg -3'
miRNA:   3'- cgaaCGGCUUGCa------GCUGGuGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 5690 0.68 0.908786
Target:  5'- cGCcgUGCCG-GCGcugCGGCCACcGCuGCu -3'
miRNA:   3'- -CGa-ACGGCuUGCa--GCUGGUGuCGuCG- -5'
29384 3' -53.5 NC_006151.1 + 6135 0.68 0.895284
Target:  5'- gGCUccgGCCGcggccgcgaggacGGCGgccUCGGCCuCGGCGGCg -3'
miRNA:   3'- -CGAa--CGGC-------------UUGC---AGCUGGuGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 6266 0.82 0.235966
Target:  5'- ---gGCCGGACGcgaugcccucuuccUCGGCCGCGGCGGCg -3'
miRNA:   3'- cgaaCGGCUUGC--------------AGCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 6392 0.73 0.693008
Target:  5'- aGCgagGCCGGGCGcCGAgCGCggagagcgGGCGGCg -3'
miRNA:   3'- -CGaa-CGGCUUGCaGCUgGUG--------UCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.