miRNA display CGI


Results 21 - 40 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 3' -53.5 NC_006151.1 + 97332 0.66 0.964667
Target:  5'- cGCggGUCGuugaacagguacGCGgggaaGGCCGCGGCGGCg -3'
miRNA:   3'- -CGaaCGGCu-----------UGCag---CUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 59374 0.66 0.963313
Target:  5'- cGCgcgGCCGu-CGUCGcguccagcacguggcACCgcagcaccucgaGCAGCAGCg -3'
miRNA:   3'- -CGaa-CGGCuuGCAGC---------------UGG------------UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 3102 0.66 0.961924
Target:  5'- ---cGCCGAGa---GGCCGCcGCGGCg -3'
miRNA:   3'- cgaaCGGCUUgcagCUGGUGuCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 36565 0.66 0.961924
Target:  5'- aGCggugGCCGcAGCGcCGG-CACGGCGGg -3'
miRNA:   3'- -CGaa--CGGC-UUGCaGCUgGUGUCGUCg -5'
29384 3' -53.5 NC_006151.1 + 76325 0.66 0.961924
Target:  5'- --gUGCaCGGGCugGUCGGCCGgGuGCGGCc -3'
miRNA:   3'- cgaACG-GCUUG--CAGCUGGUgU-CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 68138 0.66 0.961924
Target:  5'- cGCUcccGCgGAGCGUggucguggucaCGGCCGCcaccagcgcguaGGCGGCg -3'
miRNA:   3'- -CGAa--CGgCUUGCA-----------GCUGGUG------------UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 72154 0.66 0.961924
Target:  5'- ---aGCCGcaggcacuCGUCG-CCgaGCAGCGGCg -3'
miRNA:   3'- cgaaCGGCuu------GCAGCuGG--UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 78695 0.66 0.961924
Target:  5'- cGCcgGCCGGGgccuCGUCG-CCGCGaCGGCg -3'
miRNA:   3'- -CGaaCGGCUU----GCAGCuGGUGUcGUCG- -5'
29384 3' -53.5 NC_006151.1 + 104895 0.66 0.961924
Target:  5'- cGCgaggUGgUGGACG-CGGCgGCGGCGcGCg -3'
miRNA:   3'- -CGa---ACgGCUUGCaGCUGgUGUCGU-CG- -5'
29384 3' -53.5 NC_006151.1 + 121684 0.66 0.961924
Target:  5'- aGCggGCCGAcc--CGGCCAUggcggAGCGGCg -3'
miRNA:   3'- -CGaaCGGCUugcaGCUGGUG-----UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 142234 0.66 0.961924
Target:  5'- ---cGCCGGgucgcgacgagGCGUCGGUCAUcGCGGCg -3'
miRNA:   3'- cgaaCGGCU-----------UGCAGCUGGUGuCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 5528 0.66 0.958291
Target:  5'- aGCg-GCCGAGgaUCGAgccgccUCGCGGCGGCg -3'
miRNA:   3'- -CGaaCGGCUUgcAGCU------GGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 55073 0.66 0.958291
Target:  5'- ---cGgCGGGC-UCGGCCGCGGCGcGCc -3'
miRNA:   3'- cgaaCgGCUUGcAGCUGGUGUCGU-CG- -5'
29384 3' -53.5 NC_006151.1 + 83023 0.66 0.958291
Target:  5'- gGCgaggGCCccAgGUCGACgguggagacgCGCAGCGGCa -3'
miRNA:   3'- -CGaa--CGGcuUgCAGCUG----------GUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 97165 0.66 0.958291
Target:  5'- ---aGCCGcAGCGcUCGGCC-CGGC-GCa -3'
miRNA:   3'- cgaaCGGC-UUGC-AGCUGGuGUCGuCG- -5'
29384 3' -53.5 NC_006151.1 + 106212 0.66 0.958291
Target:  5'- gGCUcGCCcuccccgaccuGAugGU-GGCCGCGGUGGCc -3'
miRNA:   3'- -CGAaCGG-----------CUugCAgCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 103623 0.66 0.958291
Target:  5'- cGCacGCCG-ACG-CGGugGCGGCGGCg -3'
miRNA:   3'- -CGaaCGGCuUGCaGCUggUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 83363 0.66 0.954429
Target:  5'- cGCgcGCgCGGGCG-CGcaggcGCCGCAGguGCu -3'
miRNA:   3'- -CGaaCG-GCUUGCaGC-----UGGUGUCguCG- -5'
29384 3' -53.5 NC_006151.1 + 106514 0.66 0.954429
Target:  5'- cGCgccgUGCCGGGCGcgcUGGCCACcuucaccgugcuGGCGcGCa -3'
miRNA:   3'- -CGa---ACGGCUUGCa--GCUGGUG------------UCGU-CG- -5'
29384 3' -53.5 NC_006151.1 + 105663 0.66 0.954429
Target:  5'- cGCcUGCaguucuACG-CGGCCuACGGCGGCg -3'
miRNA:   3'- -CGaACGgcu---UGCaGCUGG-UGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.