miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29385 3' -58.9 NC_006151.1 + 4406 0.66 0.747794
Target:  5'- cGCGgCGCGGCCCgGgu-AGGCCaUGUc -3'
miRNA:   3'- -CGCgGCGUUGGGgUacuUCCGGgACA- -5'
29385 3' -58.9 NC_006151.1 + 5331 0.67 0.708789
Target:  5'- -aGCCGCGGCCgCGgcgGAGGGCgCCc-- -3'
miRNA:   3'- cgCGGCGUUGGgGUa--CUUCCG-GGaca -5'
29385 3' -58.9 NC_006151.1 + 5626 0.66 0.785205
Target:  5'- gGCGCCGCcGCCgCCGggcgccGAGaccGGCCCg-- -3'
miRNA:   3'- -CGCGGCGuUGG-GGUa-----CUU---CCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 5699 0.67 0.718658
Target:  5'- gGCGCUGCGGCCaCCGcUGcuGGCUgUGc -3'
miRNA:   3'- -CGCGGCGUUGG-GGU-ACuuCCGGgACa -5'
29385 3' -58.9 NC_006151.1 + 5976 0.66 0.785205
Target:  5'- cGUGCuCGgAGCCUgAUGGAGaGCCCg-- -3'
miRNA:   3'- -CGCG-GCgUUGGGgUACUUC-CGGGaca -5'
29385 3' -58.9 NC_006151.1 + 6230 0.68 0.648539
Target:  5'- -aGCCGCGGCgCCG-GGA-GCCCUGg -3'
miRNA:   3'- cgCGGCGUUGgGGUaCUUcCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 8302 0.69 0.597893
Target:  5'- gGCGCCGCGucccgccccgaGCCCCcgGGgcgcgcGGGCCUcGa -3'
miRNA:   3'- -CGCGGCGU-----------UGGGGuaCU------UCCGGGaCa -5'
29385 3' -58.9 NC_006151.1 + 8611 0.66 0.776033
Target:  5'- gGgGCCGguGCgggUGUGAGGGUCCUGUg -3'
miRNA:   3'- -CgCGGCguUGgg-GUACUUCCGGGACA- -5'
29385 3' -58.9 NC_006151.1 + 12028 0.73 0.367056
Target:  5'- cCGgCGCAACCCC----GGGCCCUGa -3'
miRNA:   3'- cGCgGCGUUGGGGuacuUCCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 13475 0.66 0.785205
Target:  5'- cGgGCCGgAccGCCCCGccGAcucGGGUCCUGg -3'
miRNA:   3'- -CgCGGCgU--UGGGGUa-CU---UCCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 13989 0.67 0.728455
Target:  5'- cGCGuccCCGgGGCCCaCGUGuGAGGCCCcGg -3'
miRNA:   3'- -CGC---GGCgUUGGG-GUAC-UUCCGGGaCa -5'
29385 3' -58.9 NC_006151.1 + 14825 0.67 0.718658
Target:  5'- cGCGuCCGCcGCgCCCAUGGaccgggucuGGGCCgaCUGg -3'
miRNA:   3'- -CGC-GGCGuUG-GGGUACU---------UCCGG--GACa -5'
29385 3' -58.9 NC_006151.1 + 15228 0.72 0.399916
Target:  5'- aGCGCCccuCGGCCCCcugcUGGcAGGCCCUGc -3'
miRNA:   3'- -CGCGGc--GUUGGGGu---ACU-UCCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 15918 0.77 0.21544
Target:  5'- cCGCCGCcGCCCCGUGAggcGGGCCUc-- -3'
miRNA:   3'- cGCGGCGuUGGGGUACU---UCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 18750 0.73 0.391526
Target:  5'- cCGCCGgGGCCCCAcGggGuGCCCgGg -3'
miRNA:   3'- cGCGGCgUUGGGGUaCuuC-CGGGaCa -5'
29385 3' -58.9 NC_006151.1 + 19342 0.69 0.571743
Target:  5'- gGC-CCGCGGCCCCGaggcgucgugcagcgUGuaGAGGCCCgUGUc -3'
miRNA:   3'- -CGcGGCGUUGGGGU---------------AC--UUCCGGG-ACA- -5'
29385 3' -58.9 NC_006151.1 + 25415 0.68 0.628264
Target:  5'- gGCGCCGCcGCCCCAcGcgcGCCCg-- -3'
miRNA:   3'- -CGCGGCGuUGGGGUaCuucCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 27173 0.66 0.784294
Target:  5'- gGCGCCGCGugucgggGCgCCA-GggGGCCg--- -3'
miRNA:   3'- -CGCGGCGU-------UGgGGUaCuuCCGGgaca -5'
29385 3' -58.9 NC_006151.1 + 29070 0.71 0.470952
Target:  5'- gGCGCCGCgGGCCCCGaGAcGGCCg--- -3'
miRNA:   3'- -CGCGGCG-UUGGGGUaCUuCCGGgaca -5'
29385 3' -58.9 NC_006151.1 + 30560 0.66 0.757319
Target:  5'- cGCGCCGCAcGCgCCGUcccgcGGCCCcGUc -3'
miRNA:   3'- -CGCGGCGU-UGgGGUAcuu--CCGGGaCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.