Results 1 - 20 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29385 | 3' | -58.9 | NC_006151.1 | + | 4406 | 0.66 | 0.747794 |
Target: 5'- cGCGgCGCGGCCCgGgu-AGGCCaUGUc -3' miRNA: 3'- -CGCgGCGUUGGGgUacuUCCGGgACA- -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 5331 | 0.67 | 0.708789 |
Target: 5'- -aGCCGCGGCCgCGgcgGAGGGCgCCc-- -3' miRNA: 3'- cgCGGCGUUGGgGUa--CUUCCG-GGaca -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 5626 | 0.66 | 0.785205 |
Target: 5'- gGCGCCGCcGCCgCCGggcgccGAGaccGGCCCg-- -3' miRNA: 3'- -CGCGGCGuUGG-GGUa-----CUU---CCGGGaca -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 5699 | 0.67 | 0.718658 |
Target: 5'- gGCGCUGCGGCCaCCGcUGcuGGCUgUGc -3' miRNA: 3'- -CGCGGCGUUGG-GGU-ACuuCCGGgACa -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 5976 | 0.66 | 0.785205 |
Target: 5'- cGUGCuCGgAGCCUgAUGGAGaGCCCg-- -3' miRNA: 3'- -CGCG-GCgUUGGGgUACUUC-CGGGaca -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 6230 | 0.68 | 0.648539 |
Target: 5'- -aGCCGCGGCgCCG-GGA-GCCCUGg -3' miRNA: 3'- cgCGGCGUUGgGGUaCUUcCGGGACa -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 8302 | 0.69 | 0.597893 |
Target: 5'- gGCGCCGCGucccgccccgaGCCCCcgGGgcgcgcGGGCCUcGa -3' miRNA: 3'- -CGCGGCGU-----------UGGGGuaCU------UCCGGGaCa -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 8611 | 0.66 | 0.776033 |
Target: 5'- gGgGCCGguGCgggUGUGAGGGUCCUGUg -3' miRNA: 3'- -CgCGGCguUGgg-GUACUUCCGGGACA- -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 12028 | 0.73 | 0.367056 |
Target: 5'- cCGgCGCAACCCC----GGGCCCUGa -3' miRNA: 3'- cGCgGCGUUGGGGuacuUCCGGGACa -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 13475 | 0.66 | 0.785205 |
Target: 5'- cGgGCCGgAccGCCCCGccGAcucGGGUCCUGg -3' miRNA: 3'- -CgCGGCgU--UGGGGUa-CU---UCCGGGACa -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 13989 | 0.67 | 0.728455 |
Target: 5'- cGCGuccCCGgGGCCCaCGUGuGAGGCCCcGg -3' miRNA: 3'- -CGC---GGCgUUGGG-GUAC-UUCCGGGaCa -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 14825 | 0.67 | 0.718658 |
Target: 5'- cGCGuCCGCcGCgCCCAUGGaccgggucuGGGCCgaCUGg -3' miRNA: 3'- -CGC-GGCGuUG-GGGUACU---------UCCGG--GACa -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 15228 | 0.72 | 0.399916 |
Target: 5'- aGCGCCccuCGGCCCCcugcUGGcAGGCCCUGc -3' miRNA: 3'- -CGCGGc--GUUGGGGu---ACU-UCCGGGACa -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 15918 | 0.77 | 0.21544 |
Target: 5'- cCGCCGCcGCCCCGUGAggcGGGCCUc-- -3' miRNA: 3'- cGCGGCGuUGGGGUACU---UCCGGGaca -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 18750 | 0.73 | 0.391526 |
Target: 5'- cCGCCGgGGCCCCAcGggGuGCCCgGg -3' miRNA: 3'- cGCGGCgUUGGGGUaCuuC-CGGGaCa -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 19342 | 0.69 | 0.571743 |
Target: 5'- gGC-CCGCGGCCCCGaggcgucgugcagcgUGuaGAGGCCCgUGUc -3' miRNA: 3'- -CGcGGCGUUGGGGU---------------AC--UUCCGGG-ACA- -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 25415 | 0.68 | 0.628264 |
Target: 5'- gGCGCCGCcGCCCCAcGcgcGCCCg-- -3' miRNA: 3'- -CGCGGCGuUGGGGUaCuucCGGGaca -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 27173 | 0.66 | 0.784294 |
Target: 5'- gGCGCCGCGugucgggGCgCCA-GggGGCCg--- -3' miRNA: 3'- -CGCGGCGU-------UGgGGUaCuuCCGGgaca -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 29070 | 0.71 | 0.470952 |
Target: 5'- gGCGCCGCgGGCCCCGaGAcGGCCg--- -3' miRNA: 3'- -CGCGGCG-UUGGGGUaCUuCCGGgaca -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 30560 | 0.66 | 0.757319 |
Target: 5'- cGCGCCGCAcGCgCCGUcccgcGGCCCcGUc -3' miRNA: 3'- -CGCGGCGU-UGgGGUAcuu--CCGGGaCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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