Results 21 - 40 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29385 | 3' | -58.9 | NC_006151.1 | + | 119595 | 0.66 | 0.757319 |
Target: 5'- cGCGCCGacggAGCCCCAUGGGcGUCUUc- -3' miRNA: 3'- -CGCGGCg---UUGGGGUACUUcCGGGAca -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 133451 | 0.66 | 0.757319 |
Target: 5'- gGCGCuCuuGGCCCCGgucGAGGCCCg-- -3' miRNA: 3'- -CGCG-GcgUUGGGGUac-UUCCGGGaca -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 37477 | 0.66 | 0.757319 |
Target: 5'- cGCGCCGCGGCC------GGGCCCg-- -3' miRNA: 3'- -CGCGGCGUUGGgguacuUCCGGGaca -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 65514 | 0.66 | 0.756371 |
Target: 5'- cGCGCCuccuccgcggccaGCAGCgUCAUGAcGGCCUcGUg -3' miRNA: 3'- -CGCGG-------------CGUUGgGGUACUuCCGGGaCA- -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 104526 | 0.66 | 0.751616 |
Target: 5'- cCGCCGCGgcuuCCCCGaguacgaggccgagcUGGccGCCCUGg -3' miRNA: 3'- cGCGGCGUu---GGGGU---------------ACUucCGGGACa -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 69380 | 0.66 | 0.747794 |
Target: 5'- aGCGCCGuCAGCggCC--GggGGUCCUGg -3' miRNA: 3'- -CGCGGC-GUUGg-GGuaCuuCCGGGACa -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 109069 | 0.66 | 0.747794 |
Target: 5'- aGCaGCCGUccccGCCCCcgGAgucggccccggAGGCCCaGUg -3' miRNA: 3'- -CG-CGGCGu---UGGGGuaCU-----------UCCGGGaCA- -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 40458 | 0.66 | 0.747794 |
Target: 5'- gGCGCCuGCcuCCCCGgcccGguGGCCCUc- -3' miRNA: 3'- -CGCGG-CGuuGGGGUa---CuuCCGGGAca -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 61314 | 0.66 | 0.747794 |
Target: 5'- cGCGCUGCAGgUCCAgGGAGacGCCCg-- -3' miRNA: 3'- -CGCGGCGUUgGGGUaCUUC--CGGGaca -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 86298 | 0.66 | 0.747794 |
Target: 5'- gGCGUCGUcaacuGCCCgCAgcUGggGGCCgUGc -3' miRNA: 3'- -CGCGGCGu----UGGG-GU--ACuuCCGGgACa -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 103856 | 0.66 | 0.747794 |
Target: 5'- uGCGCgCGCAGCCCgAcGAGGGgaCgCUGg -3' miRNA: 3'- -CGCG-GCGUUGGGgUaCUUCCg-G-GACa -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 4406 | 0.66 | 0.747794 |
Target: 5'- cGCGgCGCGGCCCgGgu-AGGCCaUGUc -3' miRNA: 3'- -CGCgGCGUUGGGgUacuUCCGGgACA- -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 112605 | 0.66 | 0.746836 |
Target: 5'- cCGCCGCGGCgCCGcuggcgcUGGAcGaGCCCUGc -3' miRNA: 3'- cGCGGCGUUGgGGU-------ACUU-C-CGGGACa -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 68187 | 0.66 | 0.746836 |
Target: 5'- gGCGUCGUugagcagGACCacgaCGUGGAagcGGCCCUGc -3' miRNA: 3'- -CGCGGCG-------UUGGg---GUACUU---CCGGGACa -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 95136 | 0.66 | 0.73817 |
Target: 5'- gGCGCCGC-GCCgCCggGucGGCCaUGUc -3' miRNA: 3'- -CGCGGCGuUGG-GGuaCuuCCGGgACA- -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 104806 | 0.66 | 0.73817 |
Target: 5'- uGCGCCGCGACCUgGcGgcGGCgCg-- -3' miRNA: 3'- -CGCGGCGUUGGGgUaCuuCCGgGaca -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 109809 | 0.66 | 0.73817 |
Target: 5'- uGCGCCGcCGGCCCCGcgcuccccgcUGgcGGaCCCc-- -3' miRNA: 3'- -CGCGGC-GUUGGGGU----------ACuuCC-GGGaca -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 112708 | 0.67 | 0.728455 |
Target: 5'- cGCGgCGCuguGCgCCA---AGGCCCUGg -3' miRNA: 3'- -CGCgGCGu--UGgGGUacuUCCGGGACa -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 90099 | 0.67 | 0.728455 |
Target: 5'- cGCGCCGCAggccgcggcgACgCCCAUGAcgAGGCa---- -3' miRNA: 3'- -CGCGGCGU----------UG-GGGUACU--UCCGggaca -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 13989 | 0.67 | 0.728455 |
Target: 5'- cGCGuccCCGgGGCCCaCGUGuGAGGCCCcGg -3' miRNA: 3'- -CGC---GGCgUUGGG-GUAC-UUCCGGGaCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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