miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29385 3' -58.9 NC_006151.1 + 119595 0.66 0.757319
Target:  5'- cGCGCCGacggAGCCCCAUGGGcGUCUUc- -3'
miRNA:   3'- -CGCGGCg---UUGGGGUACUUcCGGGAca -5'
29385 3' -58.9 NC_006151.1 + 133451 0.66 0.757319
Target:  5'- gGCGCuCuuGGCCCCGgucGAGGCCCg-- -3'
miRNA:   3'- -CGCG-GcgUUGGGGUac-UUCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 37477 0.66 0.757319
Target:  5'- cGCGCCGCGGCC------GGGCCCg-- -3'
miRNA:   3'- -CGCGGCGUUGGgguacuUCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 65514 0.66 0.756371
Target:  5'- cGCGCCuccuccgcggccaGCAGCgUCAUGAcGGCCUcGUg -3'
miRNA:   3'- -CGCGG-------------CGUUGgGGUACUuCCGGGaCA- -5'
29385 3' -58.9 NC_006151.1 + 104526 0.66 0.751616
Target:  5'- cCGCCGCGgcuuCCCCGaguacgaggccgagcUGGccGCCCUGg -3'
miRNA:   3'- cGCGGCGUu---GGGGU---------------ACUucCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 69380 0.66 0.747794
Target:  5'- aGCGCCGuCAGCggCC--GggGGUCCUGg -3'
miRNA:   3'- -CGCGGC-GUUGg-GGuaCuuCCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 109069 0.66 0.747794
Target:  5'- aGCaGCCGUccccGCCCCcgGAgucggccccggAGGCCCaGUg -3'
miRNA:   3'- -CG-CGGCGu---UGGGGuaCU-----------UCCGGGaCA- -5'
29385 3' -58.9 NC_006151.1 + 40458 0.66 0.747794
Target:  5'- gGCGCCuGCcuCCCCGgcccGguGGCCCUc- -3'
miRNA:   3'- -CGCGG-CGuuGGGGUa---CuuCCGGGAca -5'
29385 3' -58.9 NC_006151.1 + 61314 0.66 0.747794
Target:  5'- cGCGCUGCAGgUCCAgGGAGacGCCCg-- -3'
miRNA:   3'- -CGCGGCGUUgGGGUaCUUC--CGGGaca -5'
29385 3' -58.9 NC_006151.1 + 86298 0.66 0.747794
Target:  5'- gGCGUCGUcaacuGCCCgCAgcUGggGGCCgUGc -3'
miRNA:   3'- -CGCGGCGu----UGGG-GU--ACuuCCGGgACa -5'
29385 3' -58.9 NC_006151.1 + 103856 0.66 0.747794
Target:  5'- uGCGCgCGCAGCCCgAcGAGGGgaCgCUGg -3'
miRNA:   3'- -CGCG-GCGUUGGGgUaCUUCCg-G-GACa -5'
29385 3' -58.9 NC_006151.1 + 4406 0.66 0.747794
Target:  5'- cGCGgCGCGGCCCgGgu-AGGCCaUGUc -3'
miRNA:   3'- -CGCgGCGUUGGGgUacuUCCGGgACA- -5'
29385 3' -58.9 NC_006151.1 + 112605 0.66 0.746836
Target:  5'- cCGCCGCGGCgCCGcuggcgcUGGAcGaGCCCUGc -3'
miRNA:   3'- cGCGGCGUUGgGGU-------ACUU-C-CGGGACa -5'
29385 3' -58.9 NC_006151.1 + 68187 0.66 0.746836
Target:  5'- gGCGUCGUugagcagGACCacgaCGUGGAagcGGCCCUGc -3'
miRNA:   3'- -CGCGGCG-------UUGGg---GUACUU---CCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 95136 0.66 0.73817
Target:  5'- gGCGCCGC-GCCgCCggGucGGCCaUGUc -3'
miRNA:   3'- -CGCGGCGuUGG-GGuaCuuCCGGgACA- -5'
29385 3' -58.9 NC_006151.1 + 104806 0.66 0.73817
Target:  5'- uGCGCCGCGACCUgGcGgcGGCgCg-- -3'
miRNA:   3'- -CGCGGCGUUGGGgUaCuuCCGgGaca -5'
29385 3' -58.9 NC_006151.1 + 109809 0.66 0.73817
Target:  5'- uGCGCCGcCGGCCCCGcgcuccccgcUGgcGGaCCCc-- -3'
miRNA:   3'- -CGCGGC-GUUGGGGU----------ACuuCC-GGGaca -5'
29385 3' -58.9 NC_006151.1 + 112708 0.67 0.728455
Target:  5'- cGCGgCGCuguGCgCCA---AGGCCCUGg -3'
miRNA:   3'- -CGCgGCGu--UGgGGUacuUCCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 90099 0.67 0.728455
Target:  5'- cGCGCCGCAggccgcggcgACgCCCAUGAcgAGGCa---- -3'
miRNA:   3'- -CGCGGCGU----------UG-GGGUACU--UCCGggaca -5'
29385 3' -58.9 NC_006151.1 + 13989 0.67 0.728455
Target:  5'- cGCGuccCCGgGGCCCaCGUGuGAGGCCCcGg -3'
miRNA:   3'- -CGC---GGCgUUGGG-GUAC-UUCCGGGaCa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.