Results 1 - 20 of 254 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29385 | 5' | -54.3 | NC_006151.1 | + | 126246 | 1.13 | 0.002376 |
Target: 5'- aCGACGAAGACGCUCAAGGAGGACGGCg -3' miRNA: 3'- -GCUGCUUCUGCGAGUUCCUCCUGCCG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 36222 | 0.84 | 0.186514 |
Target: 5'- aCGACGAAGACGag-GAGGAGGACGaGCc -3' miRNA: 3'- -GCUGCUUCUGCgagUUCCUCCUGC-CG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 15847 | 0.83 | 0.196092 |
Target: 5'- aGACGAAGACGgagagggCGAGGAGGGCGGg -3' miRNA: 3'- gCUGCUUCUGCga-----GUUCCUCCUGCCg -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 78555 | 0.81 | 0.288983 |
Target: 5'- aCGACGAAGcACGC-CcGGGAGGacGCGGCg -3' miRNA: 3'- -GCUGCUUC-UGCGaGuUCCUCC--UGCCG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 96716 | 0.81 | 0.288983 |
Target: 5'- gGGCGgcGGCGgaCGAGGAGG-CGGCg -3' miRNA: 3'- gCUGCuuCUGCgaGUUCCUCCuGCCG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 64482 | 0.8 | 0.29581 |
Target: 5'- gCGGCGggGACGCccgCGGGcGcGGGCGGCg -3' miRNA: 3'- -GCUGCuuCUGCGa--GUUC-CuCCUGCCG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 15607 | 0.8 | 0.29581 |
Target: 5'- gGACGAGGA-GgaCGAGGAGGACGGg -3' miRNA: 3'- gCUGCUUCUgCgaGUUCCUCCUGCCg -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 36847 | 0.8 | 0.309838 |
Target: 5'- gGACGAGGACGgacucggcCUCGccGGGGACGGCg -3' miRNA: 3'- gCUGCUUCUGC--------GAGUucCUCCUGCCG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 49758 | 0.79 | 0.339398 |
Target: 5'- aCGugGAAGACGg-CGAGGAGGGgaaGGCg -3' miRNA: 3'- -GCugCUUCUGCgaGUUCCUCCUg--CCG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 44394 | 0.79 | 0.362877 |
Target: 5'- -cGCGggGGCGC-CGAGGAGGGaggGGCg -3' miRNA: 3'- gcUGCuuCUGCGaGUUCCUCCUg--CCG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 30841 | 0.78 | 0.379145 |
Target: 5'- gGGCGGAGAgGagCGAGGAGGACuGGCg -3' miRNA: 3'- gCUGCUUCUgCgaGUUCCUCCUG-CCG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 32100 | 0.78 | 0.386623 |
Target: 5'- gGACGcggggaaGAGACGCggaGAGGGGGACGGg -3' miRNA: 3'- gCUGC-------UUCUGCGag-UUCCUCCUGCCg -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 82653 | 0.78 | 0.39082 |
Target: 5'- gCGGCGAGGgcggcccacccugcgGCGCgccgCGGGcGAGGGCGGCg -3' miRNA: 3'- -GCUGCUUC---------------UGCGa---GUUC-CUCCUGCCG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 15786 | 0.78 | 0.404446 |
Target: 5'- aCGAgGAGGACGaggaaGGGGAGGACGGg -3' miRNA: 3'- -GCUgCUUCUGCgag--UUCCUCCUGCCg -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 66815 | 0.77 | 0.421895 |
Target: 5'- aCGACGAcGGCGa-CGAGGAGGAUGGg -3' miRNA: 3'- -GCUGCUuCUGCgaGUUCCUCCUGCCg -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 5182 | 0.77 | 0.421895 |
Target: 5'- gGACGAGGACGaggaggaCGAGGAGGACGa- -3' miRNA: 3'- gCUGCUUCUGCga-----GUUCCUCCUGCcg -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 5215 | 0.77 | 0.458107 |
Target: 5'- gGACGAGGACGag-GAGGAGGccgagcgccgcGCGGCg -3' miRNA: 3'- gCUGCUUCUGCgagUUCCUCC-----------UGCCG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 11807 | 0.76 | 0.467418 |
Target: 5'- gGGCGggGugGggUggGGGGcGGCGGCg -3' miRNA: 3'- gCUGCuuCugCgaGuuCCUC-CUGCCG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 52607 | 0.76 | 0.476826 |
Target: 5'- gGACGAAGGCGUcgUCGcGcAGGACGGCc -3' miRNA: 3'- gCUGCUUCUGCG--AGUuCcUCCUGCCG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 105484 | 0.76 | 0.476826 |
Target: 5'- gCGACGccGGUGCcgUCGAGGAGGACGuGCg -3' miRNA: 3'- -GCUGCuuCUGCG--AGUUCCUCCUGC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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