miRNA display CGI


Results 1 - 20 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29385 5' -54.3 NC_006151.1 + 126246 1.13 0.002376
Target:  5'- aCGACGAAGACGCUCAAGGAGGACGGCg -3'
miRNA:   3'- -GCUGCUUCUGCGAGUUCCUCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 36222 0.84 0.186514
Target:  5'- aCGACGAAGACGag-GAGGAGGACGaGCc -3'
miRNA:   3'- -GCUGCUUCUGCgagUUCCUCCUGC-CG- -5'
29385 5' -54.3 NC_006151.1 + 15847 0.83 0.196092
Target:  5'- aGACGAAGACGgagagggCGAGGAGGGCGGg -3'
miRNA:   3'- gCUGCUUCUGCga-----GUUCCUCCUGCCg -5'
29385 5' -54.3 NC_006151.1 + 78555 0.81 0.288983
Target:  5'- aCGACGAAGcACGC-CcGGGAGGacGCGGCg -3'
miRNA:   3'- -GCUGCUUC-UGCGaGuUCCUCC--UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 96716 0.81 0.288983
Target:  5'- gGGCGgcGGCGgaCGAGGAGG-CGGCg -3'
miRNA:   3'- gCUGCuuCUGCgaGUUCCUCCuGCCG- -5'
29385 5' -54.3 NC_006151.1 + 64482 0.8 0.29581
Target:  5'- gCGGCGggGACGCccgCGGGcGcGGGCGGCg -3'
miRNA:   3'- -GCUGCuuCUGCGa--GUUC-CuCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 15607 0.8 0.29581
Target:  5'- gGACGAGGA-GgaCGAGGAGGACGGg -3'
miRNA:   3'- gCUGCUUCUgCgaGUUCCUCCUGCCg -5'
29385 5' -54.3 NC_006151.1 + 36847 0.8 0.309838
Target:  5'- gGACGAGGACGgacucggcCUCGccGGGGACGGCg -3'
miRNA:   3'- gCUGCUUCUGC--------GAGUucCUCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 49758 0.79 0.339398
Target:  5'- aCGugGAAGACGg-CGAGGAGGGgaaGGCg -3'
miRNA:   3'- -GCugCUUCUGCgaGUUCCUCCUg--CCG- -5'
29385 5' -54.3 NC_006151.1 + 44394 0.79 0.362877
Target:  5'- -cGCGggGGCGC-CGAGGAGGGaggGGCg -3'
miRNA:   3'- gcUGCuuCUGCGaGUUCCUCCUg--CCG- -5'
29385 5' -54.3 NC_006151.1 + 30841 0.78 0.379145
Target:  5'- gGGCGGAGAgGagCGAGGAGGACuGGCg -3'
miRNA:   3'- gCUGCUUCUgCgaGUUCCUCCUG-CCG- -5'
29385 5' -54.3 NC_006151.1 + 32100 0.78 0.386623
Target:  5'- gGACGcggggaaGAGACGCggaGAGGGGGACGGg -3'
miRNA:   3'- gCUGC-------UUCUGCGag-UUCCUCCUGCCg -5'
29385 5' -54.3 NC_006151.1 + 82653 0.78 0.39082
Target:  5'- gCGGCGAGGgcggcccacccugcgGCGCgccgCGGGcGAGGGCGGCg -3'
miRNA:   3'- -GCUGCUUC---------------UGCGa---GUUC-CUCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 15786 0.78 0.404446
Target:  5'- aCGAgGAGGACGaggaaGGGGAGGACGGg -3'
miRNA:   3'- -GCUgCUUCUGCgag--UUCCUCCUGCCg -5'
29385 5' -54.3 NC_006151.1 + 66815 0.77 0.421895
Target:  5'- aCGACGAcGGCGa-CGAGGAGGAUGGg -3'
miRNA:   3'- -GCUGCUuCUGCgaGUUCCUCCUGCCg -5'
29385 5' -54.3 NC_006151.1 + 5182 0.77 0.421895
Target:  5'- gGACGAGGACGaggaggaCGAGGAGGACGa- -3'
miRNA:   3'- gCUGCUUCUGCga-----GUUCCUCCUGCcg -5'
29385 5' -54.3 NC_006151.1 + 5215 0.77 0.458107
Target:  5'- gGACGAGGACGag-GAGGAGGccgagcgccgcGCGGCg -3'
miRNA:   3'- gCUGCUUCUGCgagUUCCUCC-----------UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 11807 0.76 0.467418
Target:  5'- gGGCGggGugGggUggGGGGcGGCGGCg -3'
miRNA:   3'- gCUGCuuCugCgaGuuCCUC-CUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 52607 0.76 0.476826
Target:  5'- gGACGAAGGCGUcgUCGcGcAGGACGGCc -3'
miRNA:   3'- gCUGCUUCUGCG--AGUuCcUCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 105484 0.76 0.476826
Target:  5'- gCGACGccGGUGCcgUCGAGGAGGACGuGCg -3'
miRNA:   3'- -GCUGCuuCUGCG--AGUUCCUCCUGC-CG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.