miRNA display CGI


Results 1 - 20 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29385 5' -54.3 NC_006151.1 + 25 0.66 0.950438
Target:  5'- gCGAaaaaaGggGGCgggGCUUaAAGGGGGGgGGCu -3'
miRNA:   3'- -GCUg----CuuCUG---CGAG-UUCCUCCUgCCG- -5'
29385 5' -54.3 NC_006151.1 + 1863 0.7 0.820902
Target:  5'- cCGcCGcGGACGCagaggagGAGGAGGACGGg -3'
miRNA:   3'- -GCuGCuUCUGCGag-----UUCCUCCUGCCg -5'
29385 5' -54.3 NC_006151.1 + 1900 0.72 0.737626
Target:  5'- gGACGAGGACGaggaCGAGGAccGGGCcgagGGCg -3'
miRNA:   3'- gCUGCUUCUGCga--GUUCCU--CCUG----CCG- -5'
29385 5' -54.3 NC_006151.1 + 2237 0.69 0.866841
Target:  5'- gCGGCGcGGACGCUgGucucgaAGGGGGcaaagucccagagcACGGCc -3'
miRNA:   3'- -GCUGCuUCUGCGAgU------UCCUCC--------------UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 2300 0.76 0.515343
Target:  5'- gCGGCGAcGGCGCcCGGGGucagcaccagcGGGGCGGCc -3'
miRNA:   3'- -GCUGCUuCUGCGaGUUCC-----------UCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 3083 0.66 0.950438
Target:  5'- gGGCGAAGGCGg-CGAGcagcgccgaGAGGccgccGCGGCg -3'
miRNA:   3'- gCUGCUUCUGCgaGUUC---------CUCC-----UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 3385 0.74 0.57526
Target:  5'- gCGGCGAGGGcCGC-CucGGAGGgccGCGGCg -3'
miRNA:   3'- -GCUGCUUCU-GCGaGuuCCUCC---UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 3510 0.67 0.936919
Target:  5'- gGAgGAGGAgGag-GAGGAGGACaGCa -3'
miRNA:   3'- gCUgCUUCUgCgagUUCCUCCUGcCG- -5'
29385 5' -54.3 NC_006151.1 + 3904 0.69 0.860783
Target:  5'- aCGACGAggccGGGCuGCUCGGGccagagcGGGGGCaGGCc -3'
miRNA:   3'- -GCUGCU----UCUG-CGAGUUC-------CUCCUG-CCG- -5'
29385 5' -54.3 NC_006151.1 + 4259 0.72 0.697816
Target:  5'- gGGCaGcAGGCGCUCGAGGAcGccGCGGCa -3'
miRNA:   3'- gCUG-CuUCUGCGAGUUCCUcC--UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 4357 0.66 0.958286
Target:  5'- gGACGcGGGCGCagAGGGccucGACGGUc -3'
miRNA:   3'- gCUGCuUCUGCGagUUCCuc--CUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 4771 0.67 0.931936
Target:  5'- gGAUGAAGACGggCAcGGGcccGGccGCGGCg -3'
miRNA:   3'- gCUGCUUCUGCgaGUuCCU---CC--UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 5040 0.69 0.876396
Target:  5'- cCGGgGAGGcCGCggcgGAGGAGGA-GGCg -3'
miRNA:   3'- -GCUgCUUCuGCGag--UUCCUCCUgCCG- -5'
29385 5' -54.3 NC_006151.1 + 5182 0.77 0.421895
Target:  5'- gGACGAGGACGaggaggaCGAGGAGGACGa- -3'
miRNA:   3'- gCUGCUUCUGCga-----GUUCCUCCUGCcg -5'
29385 5' -54.3 NC_006151.1 + 5215 0.77 0.458107
Target:  5'- gGACGAGGACGag-GAGGAGGccgagcgccgcGCGGCg -3'
miRNA:   3'- gCUGCUUCUGCgagUUCCUCC-----------UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 5252 0.69 0.869079
Target:  5'- gCGGCGggGGC-C-CGGGGGgcGGAgGGCg -3'
miRNA:   3'- -GCUGCuuCUGcGaGUUCCU--CCUgCCG- -5'
29385 5' -54.3 NC_006151.1 + 5841 0.72 0.707874
Target:  5'- aGGcCGggGAgGCUgcgGAGGGGGACGaGCg -3'
miRNA:   3'- gCU-GCuuCUgCGAg--UUCCUCCUGC-CG- -5'
29385 5' -54.3 NC_006151.1 + 5989 0.66 0.958286
Target:  5'- uGAUGGAGA-GCcCGAccGGGGGAccCGGCg -3'
miRNA:   3'- gCUGCUUCUgCGaGUU--CCUCCU--GCCG- -5'
29385 5' -54.3 NC_006151.1 + 6084 0.71 0.775023
Target:  5'- cCGGCGggGcUGCUgCugcugcugggccgAAGGAGGACGGg -3'
miRNA:   3'- -GCUGCuuCuGCGA-G-------------UUCCUCCUGCCg -5'
29385 5' -54.3 NC_006151.1 + 6123 0.7 0.812225
Target:  5'- gGGCGGccucGugGCUCcGGccgcggccgcGAGGACGGCg -3'
miRNA:   3'- gCUGCUu---CugCGAGuUC----------CUCCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.