miRNA display CGI


Results 21 - 40 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29385 5' -54.3 NC_006151.1 + 124053 0.66 0.958286
Target:  5'- aCGGCGAccuGGACGCgc-----GGACGGCc -3'
miRNA:   3'- -GCUGCU---UCUGCGaguuccuCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 133283 0.66 0.958286
Target:  5'- cCGGCGgcGGCcCacgUCGAGGuucuccccgGGGGCGGCc -3'
miRNA:   3'- -GCUGCuuCUGcG---AGUUCC---------UCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 139639 0.66 0.958286
Target:  5'- cCGGCGccGGCGC----GGGGGucGCGGCg -3'
miRNA:   3'- -GCUGCuuCUGCGaguuCCUCC--UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 30762 0.66 0.957167
Target:  5'- gGGCGggGGCagcacucagcgaagGCUCAGGGuGuuccagccGAUGGCc -3'
miRNA:   3'- gCUGCuuCUG--------------CGAGUUCCuC--------CUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 68859 0.66 0.957167
Target:  5'- gCGACGcguccagcagcgccGGGGCGCgcccggccaCGucGAGGACGGCc -3'
miRNA:   3'- -GCUGC--------------UUCUGCGa--------GUucCUCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 93954 0.66 0.954476
Target:  5'- gCGACGGAGGCGCaCucGGc-GACGcGCg -3'
miRNA:   3'- -GCUGCUUCUGCGaGuuCCucCUGC-CG- -5'
29385 5' -54.3 NC_006151.1 + 118409 0.66 0.954476
Target:  5'- gGugGAcaACGC-CGAGGAGacGACGGg -3'
miRNA:   3'- gCugCUucUGCGaGUUCCUC--CUGCCg -5'
29385 5' -54.3 NC_006151.1 + 105061 0.66 0.954476
Target:  5'- uCGA-GGAGGCGCcCGAGcuGGACGuGCa -3'
miRNA:   3'- -GCUgCUUCUGCGaGUUCcuCCUGC-CG- -5'
29385 5' -54.3 NC_006151.1 + 139193 0.66 0.954476
Target:  5'- uGGCGGucgGGGCGCUgGAGcuccuGGCGGCg -3'
miRNA:   3'- gCUGCU---UCUGCGAgUUCcuc--CUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 103006 0.66 0.954476
Target:  5'- gGGCGAGGACGU--GAGcacGGACGaGCg -3'
miRNA:   3'- gCUGCUUCUGCGagUUCcu-CCUGC-CG- -5'
29385 5' -54.3 NC_006151.1 + 111336 0.66 0.954476
Target:  5'- gGGCGAGauGACGgUCGGgcGGAuGGGCGcGCg -3'
miRNA:   3'- gCUGCUU--CUGCgAGUU--CCU-CCUGC-CG- -5'
29385 5' -54.3 NC_006151.1 + 126274 0.66 0.954476
Target:  5'- uCGACGAAGGCGaCguggaCGAGGccaagcuGGACcaGGCc -3'
miRNA:   3'- -GCUGCUUCUGC-Ga----GUUCCu------CCUG--CCG- -5'
29385 5' -54.3 NC_006151.1 + 17672 0.66 0.954476
Target:  5'- cCGACGAgaggaacagcagAGACGCggaGAcGAGGAaGGCu -3'
miRNA:   3'- -GCUGCU------------UCUGCGag-UUcCUCCUgCCG- -5'
29385 5' -54.3 NC_006151.1 + 43683 0.66 0.954083
Target:  5'- gCGACGAGGggcccgccgGCGCgacggggaGAGGAaccgaaaaaucggGGACGGUg -3'
miRNA:   3'- -GCUGCUUC---------UGCGag------UUCCU-------------CCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 25 0.66 0.950438
Target:  5'- gCGAaaaaaGggGGCgggGCUUaAAGGGGGGgGGCu -3'
miRNA:   3'- -GCUg----CuuCUG---CGAG-UUCCUCCUgCCG- -5'
29385 5' -54.3 NC_006151.1 + 44492 0.66 0.950438
Target:  5'- gGugGggGAUGgUguGGGGuGGCGGUg -3'
miRNA:   3'- gCugCuuCUGCgAguUCCUcCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 3083 0.66 0.950438
Target:  5'- gGGCGAAGGCGg-CGAGcagcgccgaGAGGccgccGCGGCg -3'
miRNA:   3'- gCUGCUUCUGCgaGUUC---------CUCC-----UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 10014 0.66 0.950438
Target:  5'- gCGGCGgcGGCGgUCGccgcggccAGGAGGAaaaaCGGg -3'
miRNA:   3'- -GCUGCuuCUGCgAGU--------UCCUCCU----GCCg -5'
29385 5' -54.3 NC_006151.1 + 76811 0.66 0.950438
Target:  5'- cCGGCGAGGGCGggCGcGuAGuGGCGGCc -3'
miRNA:   3'- -GCUGCUUCUGCgaGUuCcUC-CUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 127707 0.66 0.950438
Target:  5'- gCGACGA----GCUCGuGGAGGcccCGGCg -3'
miRNA:   3'- -GCUGCUucugCGAGUuCCUCCu--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.