miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29386 3' -59.6 NC_006151.1 + 82657 0.66 0.715132
Target:  5'- cGAGGGCgGCccACCCUGcGGcgcgccgcgGGCGAGGg -3'
miRNA:   3'- -UUCCUGgCG--UGGGACaCC---------UCGCUCUa -5'
29386 3' -59.6 NC_006151.1 + 44342 0.66 0.715132
Target:  5'- gGAGGGCCGCGgaCggGUGGgacGGCGGGGg -3'
miRNA:   3'- -UUCCUGGCGUggGa-CACC---UCGCUCUa -5'
29386 3' -59.6 NC_006151.1 + 3402 0.66 0.705148
Target:  5'- gGAGGGCCGCGgCgUGUGGgucucgccGGcCGGGAc -3'
miRNA:   3'- -UUCCUGGCGUgGgACACC--------UC-GCUCUa -5'
29386 3' -59.6 NC_006151.1 + 8130 0.66 0.705148
Target:  5'- -cGGACCcCGCCCgGUGGgggGGCGGGu- -3'
miRNA:   3'- uuCCUGGcGUGGGaCACC---UCGCUCua -5'
29386 3' -59.6 NC_006151.1 + 89150 0.66 0.674861
Target:  5'- -cGaGACCGCGCCCgccucGGGCGAGGc -3'
miRNA:   3'- uuC-CUGGCGUGGGacac-CUCGCUCUa -5'
29386 3' -59.6 NC_006151.1 + 49669 0.67 0.634029
Target:  5'- -cGGGCCGCGCCCgGaGGAcGCG-GAc -3'
miRNA:   3'- uuCCUGGCGUGGGaCaCCU-CGCuCUa -5'
29386 3' -59.6 NC_006151.1 + 89727 0.67 0.634029
Target:  5'- --cGGCCGCGgCCgcgGUGGugGGCGAGAc -3'
miRNA:   3'- uucCUGGCGUgGGa--CACC--UCGCUCUa -5'
29386 3' -59.6 NC_006151.1 + 77542 0.67 0.603358
Target:  5'- -uGGGCCGC-CCCgcaggGGAGCGAcGAc -3'
miRNA:   3'- uuCCUGGCGuGGGaca--CCUCGCU-CUa -5'
29386 3' -59.6 NC_006151.1 + 27694 0.68 0.583005
Target:  5'- -cGGucCCGCucgcguCCCUGUGGGGgGGGGg -3'
miRNA:   3'- uuCCu-GGCGu-----GGGACACCUCgCUCUa -5'
29386 3' -59.6 NC_006151.1 + 130920 0.68 0.562794
Target:  5'- cGGuGGCCGgGCCCgcgGGGGCGGGGg -3'
miRNA:   3'- uUC-CUGGCgUGGGacaCCUCGCUCUa -5'
29386 3' -59.6 NC_006151.1 + 64866 0.7 0.474874
Target:  5'- gGAGGGCCGCugCCcGgcgGGAGCaGGGc -3'
miRNA:   3'- -UUCCUGGCGugGGaCa--CCUCGcUCUa -5'
29386 3' -59.6 NC_006151.1 + 125421 1.04 0.002335
Target:  5'- cAAGGACCGCACCCUGUGGAGCGAGAUg -3'
miRNA:   3'- -UUCCUGGCGUGGGACACCUCGCUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.