miRNA display CGI


Results 41 - 60 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29386 5' -63.8 NC_006151.1 + 140192 0.66 0.561475
Target:  5'- uGGACCCCA---UCGUGGCCACcGCgGg -3'
miRNA:   3'- -CUUGGGGUcgcGGCACCGGUGcCGgC- -5'
29386 5' -63.8 NC_006151.1 + 27164 0.66 0.561475
Target:  5'- cGGCCCCgaGGCGCCGcgugucgGGgCGCcagggGGCCGc -3'
miRNA:   3'- cUUGGGG--UCGCGGCa------CCgGUG-----CCGGC- -5'
29386 5' -63.8 NC_006151.1 + 115119 0.66 0.561475
Target:  5'- -cGCCgCCGGCGacgcgcgCGUGcGCCuCGGCCa -3'
miRNA:   3'- cuUGG-GGUCGCg------GCAC-CGGuGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 140442 0.66 0.561475
Target:  5'- cGugCCCGGCGCCu--GCCuCGGCgGg -3'
miRNA:   3'- cUugGGGUCGCGGcacCGGuGCCGgC- -5'
29386 5' -63.8 NC_006151.1 + 28159 0.66 0.561475
Target:  5'- cGAuCCCCgucGGCGUCGUuggggcggcgaGuGCCGuCGGCCGg -3'
miRNA:   3'- -CUuGGGG---UCGCGGCA-----------C-CGGU-GCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 98059 0.66 0.551897
Target:  5'- cAGCCCCgGGCGCUc-GGCCugGGgCu -3'
miRNA:   3'- cUUGGGG-UCGCGGcaCCGGugCCgGc -5'
29386 5' -63.8 NC_006151.1 + 88465 0.66 0.551897
Target:  5'- -cGCCCgAGC-UCGUcGGCCACGGUg- -3'
miRNA:   3'- cuUGGGgUCGcGGCA-CCGGUGCCGgc -5'
29386 5' -63.8 NC_006151.1 + 100825 0.66 0.54237
Target:  5'- cGGGCCCCGaCGCCGUG-CCGCucucGGCg- -3'
miRNA:   3'- -CUUGGGGUcGCGGCACcGGUG----CCGgc -5'
29386 5' -63.8 NC_006151.1 + 106695 0.66 0.54237
Target:  5'- cGGGCgCCGGCGaccuguacgcgcCCGUGGgCACGGgCa -3'
miRNA:   3'- -CUUGgGGUCGC------------GGCACCgGUGCCgGc -5'
29386 5' -63.8 NC_006151.1 + 131866 0.66 0.54237
Target:  5'- -cGCgCCGGCGgCGUcgggucgcagGGCagCACGGCCGa -3'
miRNA:   3'- cuUGgGGUCGCgGCA----------CCG--GUGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 135358 0.66 0.54237
Target:  5'- cGAGCCgCC-GCGCguUGGCCGCGugcGCCGc -3'
miRNA:   3'- -CUUGG-GGuCGCGgcACCGGUGC---CGGC- -5'
29386 5' -63.8 NC_006151.1 + 60308 0.66 0.54237
Target:  5'- cAugUCCGG-GCCGUGcGCCAuCGGCUu -3'
miRNA:   3'- cUugGGGUCgCGGCAC-CGGU-GCCGGc -5'
29386 5' -63.8 NC_006151.1 + 90922 0.66 0.54237
Target:  5'- cAGCCCguGCGCCGUcucgaGcGUCAUGGCg- -3'
miRNA:   3'- cUUGGGguCGCGGCA-----C-CGGUGCCGgc -5'
29386 5' -63.8 NC_006151.1 + 2466 0.66 0.551897
Target:  5'- cGAGcCCCCAGCGgU-UGGCCGCGcgguGCCc -3'
miRNA:   3'- -CUU-GGGGUCGCgGcACCGGUGC----CGGc -5'
29386 5' -63.8 NC_006151.1 + 10011 0.66 0.551897
Target:  5'- aGAGCggCGGCGgCGgucGCCGCGGCCa -3'
miRNA:   3'- -CUUGggGUCGCgGCac-CGGUGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 40127 0.66 0.551897
Target:  5'- aGAUCgUCGGCGuCCGcggcGGCgACGGCCGg -3'
miRNA:   3'- cUUGG-GGUCGC-GGCa---CCGgUGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 133459 0.66 0.551897
Target:  5'- uGGCCCCGGUcgagGCCcgcgaggcGGCCGCGGgCGu -3'
miRNA:   3'- cUUGGGGUCG----CGGca------CCGGUGCCgGC- -5'
29386 5' -63.8 NC_006151.1 + 29968 0.66 0.551897
Target:  5'- cGGACCgCGGCGauGgugaaugGGcCCGCGGCCu -3'
miRNA:   3'- -CUUGGgGUCGCggCa------CC-GGUGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 57751 0.66 0.551897
Target:  5'- -cGCCgCAGcCGCuCGUGGCC-CGGgCa -3'
miRNA:   3'- cuUGGgGUC-GCG-GCACCGGuGCCgGc -5'
29386 5' -63.8 NC_006151.1 + 66444 0.66 0.551897
Target:  5'- -cGCCCCAcaGUGCCaccagacgGUGGUCccgGCGGUCGg -3'
miRNA:   3'- cuUGGGGU--CGCGG--------CACCGG---UGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.