Results 41 - 49 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29387 | 3' | -53.2 | NC_006151.1 | + | 105737 | 0.7 | 0.836444 |
Target: 5'- ---cGCGCGCCUgaagcagcgcgugGCGGcgCGCCUggGCGa -3' miRNA: 3'- caaaCGCGCGGA-------------CGUCaaGUGGA--UGC- -5' |
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29387 | 3' | -53.2 | NC_006151.1 | + | 92055 | 0.7 | 0.840674 |
Target: 5'- --cUGCuGCGCCUGCugcgcaugcugcacaAGcgCACCUACu -3' miRNA: 3'- caaACG-CGCGGACG---------------UCaaGUGGAUGc -5' |
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29387 | 3' | -53.2 | NC_006151.1 | + | 52757 | 0.71 | 0.753919 |
Target: 5'- ---cGCGCGCCUcGCAGcgcagCGCCgcgGCGu -3' miRNA: 3'- caaaCGCGCGGA-CGUCaa---GUGGa--UGC- -5' |
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29387 | 3' | -53.2 | NC_006151.1 | + | 130140 | 0.71 | 0.763773 |
Target: 5'- ---cGCGCGCCaGCAGguaCACCUcugccACGg -3' miRNA: 3'- caaaCGCGCGGaCGUCaa-GUGGA-----UGC- -5' |
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29387 | 3' | -53.2 | NC_006151.1 | + | 94045 | 0.71 | 0.792546 |
Target: 5'- ---cGCGCGCC-GCGGcgUCGCC-GCGg -3' miRNA: 3'- caaaCGCGCGGaCGUCa-AGUGGaUGC- -5' |
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29387 | 3' | -53.2 | NC_006151.1 | + | 127803 | 0.72 | 0.717571 |
Target: 5'- ---cGCGCGCgggggcgcgagguccUUGCGGUUCACgUACGu -3' miRNA: 3'- caaaCGCGCG---------------GACGUCAAGUGgAUGC- -5' |
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29387 | 3' | -53.2 | NC_006151.1 | + | 98928 | 0.76 | 0.505202 |
Target: 5'- ---cGCuGCGCgaGCAGUUCGCCgagGCGg -3' miRNA: 3'- caaaCG-CGCGgaCGUCAAGUGGa--UGC- -5' |
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29387 | 3' | -53.2 | NC_006151.1 | + | 105658 | 0.83 | 0.205045 |
Target: 5'- ---cGCuGCGCCUGCAGUUCuacgcgGCCUACGg -3' miRNA: 3'- caaaCG-CGCGGACGUCAAG------UGGAUGC- -5' |
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29387 | 3' | -53.2 | NC_006151.1 | + | 125327 | 1.1 | 0.003987 |
Target: 5'- aGUUUGCGCGCCUGCAGUUCACCUACGa -3' miRNA: 3'- -CAAACGCGCGGACGUCAAGUGGAUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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