Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 29387 | 3' | -53.2 | NC_006151.1 | + | 31776 | 0.66 | 0.960268 |
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Target: 5'- ---cGCGCGCCggGCGGcucuccuccUUCACCgcCGc -3' miRNA: 3'- caaaCGCGCGGa-CGUC---------AAGUGGauGC- -5' |
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| 29387 | 3' | -53.2 | NC_006151.1 | + | 96106 | 0.66 | 0.960268 |
|
Target: 5'- ---aGCGgGgUUGCGGgcacgaUCGCCUGCGu -3' miRNA: 3'- caaaCGCgCgGACGUCa-----AGUGGAUGC- -5' |
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| 29387 | 3' | -53.2 | NC_006151.1 | + | 76891 | 0.66 | 0.960268 |
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Target: 5'- ---aGCGcCGCCUGCug--CGCCgGCGa -3' miRNA: 3'- caaaCGC-GCGGACGucaaGUGGaUGC- -5' |
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| 29387 | 3' | -53.2 | NC_006151.1 | + | 110201 | 0.66 | 0.956468 |
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Target: 5'- ---cGCGcCGCCUGCGGgagaCGCggACGa -3' miRNA: 3'- caaaCGC-GCGGACGUCaa--GUGgaUGC- -5' |
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| 29387 | 3' | -53.2 | NC_006151.1 | + | 64297 | 0.66 | 0.952427 |
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Target: 5'- cGUUgucggGCGUGCC-GCAGcgCGCCgUGCu -3' miRNA: 3'- -CAAa----CGCGCGGaCGUCaaGUGG-AUGc -5' |
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| 29387 | 3' | -53.2 | NC_006151.1 | + | 66095 | 0.66 | 0.952427 |
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Target: 5'- ---cGCGgGCCUGCAGcgCGC--GCGc -3' miRNA: 3'- caaaCGCgCGGACGUCaaGUGgaUGC- -5' |
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| 29387 | 3' | -53.2 | NC_006151.1 | + | 119545 | 0.66 | 0.948142 |
|
Target: 5'- --cUGCGCGCacacaaccCUGCAc--CGCCUGCGc -3' miRNA: 3'- caaACGCGCG--------GACGUcaaGUGGAUGC- -5' |
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| 29387 | 3' | -53.2 | NC_006151.1 | + | 78237 | 0.66 | 0.948142 |
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Target: 5'- ---gGCGCGCa-GCGGUUCGCgCUGu- -3' miRNA: 3'- caaaCGCGCGgaCGUCAAGUG-GAUgc -5' |
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| 29387 | 3' | -53.2 | NC_006151.1 | + | 21276 | 0.65 | 0.966192 |
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Target: 5'- ---aGCGCGCCcaucGCGGUgcccgugccgacgaUCACCgaGCGg -3' miRNA: 3'- caaaCGCGCGGa---CGUCA--------------AGUGGa-UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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