Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 29387 | 3' | -53.2 | NC_006151.1 | + | 55541 | 0.67 | 0.922948 |
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Target: 5'- ---cGCGCGCCauggGCGacgaCGCCUACGu -3' miRNA: 3'- caaaCGCGCGGa---CGUcaa-GUGGAUGC- -5' |
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| 29387 | 3' | -53.2 | NC_006151.1 | + | 81901 | 0.67 | 0.922948 |
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Target: 5'- ---gGCGCGCCggucGCGGcgCGCCgccuCGg -3' miRNA: 3'- caaaCGCGCGGa---CGUCaaGUGGau--GC- -5' |
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| 29387 | 3' | -53.2 | NC_006151.1 | + | 85800 | 0.67 | 0.922948 |
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Target: 5'- ---cGCGCGCgUGCAGcgcCACCaGCu -3' miRNA: 3'- caaaCGCGCGgACGUCaa-GUGGaUGc -5' |
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| 29387 | 3' | -53.2 | NC_006151.1 | + | 20776 | 0.67 | 0.928495 |
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Target: 5'- ---cGCGCGCCgggcgaGCGGcucgCGCUUGCGc -3' miRNA: 3'- caaaCGCGCGGa-----CGUCaa--GUGGAUGC- -5' |
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| 29387 | 3' | -53.2 | NC_006151.1 | + | 62436 | 0.67 | 0.928495 |
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Target: 5'- ---cGUGCGCCUGguccgCGCCUGCa -3' miRNA: 3'- caaaCGCGCGGACgucaaGUGGAUGc -5' |
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| 29387 | 3' | -53.2 | NC_006151.1 | + | 55420 | 0.67 | 0.933786 |
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Target: 5'- --cUGCGCGCCgcGCAGgcgggCGCggACGg -3' miRNA: 3'- caaACGCGCGGa-CGUCaa---GUGgaUGC- -5' |
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| 29387 | 3' | -53.2 | NC_006151.1 | + | 95914 | 0.67 | 0.938824 |
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Target: 5'- --aUGcCGCGCgUGCAG-UCGCCcgaggGCGu -3' miRNA: 3'- caaAC-GCGCGgACGUCaAGUGGa----UGC- -5' |
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| 29387 | 3' | -53.2 | NC_006151.1 | + | 119545 | 0.66 | 0.948142 |
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Target: 5'- --cUGCGCGCacacaaccCUGCAc--CGCCUGCGc -3' miRNA: 3'- caaACGCGCG--------GACGUcaaGUGGAUGC- -5' |
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| 29387 | 3' | -53.2 | NC_006151.1 | + | 21276 | 0.65 | 0.966192 |
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Target: 5'- ---aGCGCGCCcaucGCGGUgcccgugccgacgaUCACCgaGCGg -3' miRNA: 3'- caaaCGCGCGGa---CGUCA--------------AGUGGa-UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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