miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29388 3' -55.6 NC_006151.1 + 101170 0.67 0.891503
Target:  5'- -gUGGAGGCCGcccugacggcCGACGCCGUggACg -3'
miRNA:   3'- gaGCCUCCGGUa---------GCUGCGGUAgaUGg -5'
29388 3' -55.6 NC_006151.1 + 78411 0.67 0.891503
Target:  5'- uCUCGGgccgcgAGcGCCGUgGcccACGCCGUCaACCg -3'
miRNA:   3'- -GAGCC------UC-CGGUAgC---UGCGGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 64544 0.67 0.891503
Target:  5'- gUCGGGGGCgG-CGAgGCCGUggcgcGCCa -3'
miRNA:   3'- gAGCCUCCGgUaGCUgCGGUAga---UGG- -5'
29388 3' -55.6 NC_006151.1 + 125111 0.67 0.891503
Target:  5'- -gCGGGGGCUucGUgGugGCCuUCcGCCc -3'
miRNA:   3'- gaGCCUCCGG--UAgCugCGGuAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 21431 0.68 0.839397
Target:  5'- cCUCGGGGGUCG-CGGCGUgGggugGCCc -3'
miRNA:   3'- -GAGCCUCCGGUaGCUGCGgUaga-UGG- -5'
29388 3' -55.6 NC_006151.1 + 122884 0.68 0.831151
Target:  5'- -cCGGAccgGGCCAaccgCGACGCCcUCgagcGCCu -3'
miRNA:   3'- gaGCCU---CCGGUa---GCUGCGGuAGa---UGG- -5'
29388 3' -55.6 NC_006151.1 + 87578 0.68 0.831151
Target:  5'- -gCGGAcgucuccgccGGCacCAUCGACGCCAgcUCgGCCg -3'
miRNA:   3'- gaGCCU----------CCG--GUAGCUGCGGU--AGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 78160 0.68 0.831151
Target:  5'- cCUCGGccGCCgugGUCGAgGCCGUgUccGCCg -3'
miRNA:   3'- -GAGCCucCGG---UAGCUgCGGUAgA--UGG- -5'
29388 3' -55.6 NC_006151.1 + 129088 0.68 0.831151
Target:  5'- aCUCGGGGGCguaGUUGcugcgcacgaGCGCCAgg-GCCg -3'
miRNA:   3'- -GAGCCUCCGg--UAGC----------UGCGGUagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 128010 0.68 0.822726
Target:  5'- gUCGcGGGGCgGcggCGACGgCGUCUGCg -3'
miRNA:   3'- gAGC-CUCCGgUa--GCUGCgGUAGAUGg -5'
29388 3' -55.6 NC_006151.1 + 120329 0.68 0.822726
Target:  5'- uCUCGGAcGCCG-CGcGCGCCcgCgugGCCg -3'
miRNA:   3'- -GAGCCUcCGGUaGC-UGCGGuaGa--UGG- -5'
29388 3' -55.6 NC_006151.1 + 86539 0.68 0.839397
Target:  5'- cCUCGcccGAGGCCGccgUGGCGCCGUU--CCg -3'
miRNA:   3'- -GAGC---CUCCGGUa--GCUGCGGUAGauGG- -5'
29388 3' -55.6 NC_006151.1 + 28233 0.68 0.839397
Target:  5'- --aGGGGGCCGggcCGACGggcCCAUUgGCCg -3'
miRNA:   3'- gagCCUCCGGUa--GCUGC---GGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 101443 0.68 0.839397
Target:  5'- -cUGGucGUgGUCGGCGCCGugggccugggccUCUACCg -3'
miRNA:   3'- gaGCCucCGgUAGCUGCGGU------------AGAUGG- -5'
29388 3' -55.6 NC_006151.1 + 61766 0.68 0.846657
Target:  5'- -gCGGGGGCCGUggugcugCGGCGCgAg--GCCg -3'
miRNA:   3'- gaGCCUCCGGUA-------GCUGCGgUagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 5789 0.68 0.847455
Target:  5'- -gCGGGGGaCCAUCucCGCgGggCUGCCg -3'
miRNA:   3'- gaGCCUCC-GGUAGcuGCGgUa-GAUGG- -5'
29388 3' -55.6 NC_006151.1 + 61202 0.68 0.855318
Target:  5'- -gCGGAGaGCCAUUucagcaGCGCCGUCgucuUGCCc -3'
miRNA:   3'- gaGCCUC-CGGUAGc-----UGCGGUAG----AUGG- -5'
29388 3' -55.6 NC_006151.1 + 22221 0.68 0.855318
Target:  5'- -gCGaGGGGaCCGUCGucaGCGUCAgCUGCCa -3'
miRNA:   3'- gaGC-CUCC-GGUAGC---UGCGGUaGAUGG- -5'
29388 3' -55.6 NC_006151.1 + 75421 0.68 0.855318
Target:  5'- --gGGAGGCCcggcGUgGGCGCgAagCUGCCg -3'
miRNA:   3'- gagCCUCCGG----UAgCUGCGgUa-GAUGG- -5'
29388 3' -55.6 NC_006151.1 + 19867 0.68 0.821874
Target:  5'- gCUCGG-GGCC-UCGguggagaGCGCCAgg-GCCa -3'
miRNA:   3'- -GAGCCuCCGGuAGC-------UGCGGUagaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.