Results 61 - 80 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29388 | 3' | -55.6 | NC_006151.1 | + | 101443 | 0.68 | 0.839397 |
Target: 5'- -cUGGucGUgGUCGGCGCCGugggccugggccUCUACCg -3' miRNA: 3'- gaGCCucCGgUAGCUGCGGU------------AGAUGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 126414 | 0.69 | 0.768839 |
Target: 5'- gUCGGGgcgauGGCCAcgCGcCGCCGgcaCUACCa -3' miRNA: 3'- gAGCCU-----CCGGUa-GCuGCGGUa--GAUGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 50770 | 0.69 | 0.78738 |
Target: 5'- cCUCGacGAcGGCCGcccCGACGCCccagCUGCCg -3' miRNA: 3'- -GAGC--CU-CCGGUa--GCUGCGGua--GAUGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 14388 | 0.69 | 0.796447 |
Target: 5'- cCUCGGGGGUCG-CG-CGuCCGUC-GCCu -3' miRNA: 3'- -GAGCCUCCGGUaGCuGC-GGUAGaUGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 35458 | 0.69 | 0.796447 |
Target: 5'- cCUCGcGAaaucccauuGGCCggCGGcCGCCAUCUuggGCCg -3' miRNA: 3'- -GAGC-CU---------CCGGuaGCU-GCGGUAGA---UGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 131049 | 0.69 | 0.805365 |
Target: 5'- gUCGG-GGCCG--GAgGCCGUCUccauGCCg -3' miRNA: 3'- gAGCCuCCGGUagCUgCGGUAGA----UGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 15053 | 0.69 | 0.814128 |
Target: 5'- -gCGcGGGGCCc-CGGCGCCuUCUGCg -3' miRNA: 3'- gaGC-CUCCGGuaGCUGCGGuAGAUGg -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 48391 | 0.69 | 0.814128 |
Target: 5'- -cCGGAGGUCAUCcuGugGgCGUCgggcACCg -3' miRNA: 3'- gaGCCUCCGGUAG--CugCgGUAGa---UGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 95758 | 0.69 | 0.814128 |
Target: 5'- -gCGGAGGCUcucGUCGGCGgCGagcaUGCCg -3' miRNA: 3'- gaGCCUCCGG---UAGCUGCgGUag--AUGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 139797 | 0.69 | 0.814128 |
Target: 5'- gUCGGAGaGCgCGcgCGcCGCCGUCU-CCg -3' miRNA: 3'- gAGCCUC-CG-GUa-GCuGCGGUAGAuGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 6223 | 0.7 | 0.730375 |
Target: 5'- -cCGGAGGagCcgCGGCGCCGggagcccuggCUGCCg -3' miRNA: 3'- gaGCCUCCg-GuaGCUGCGGUa---------GAUGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 37889 | 0.7 | 0.730375 |
Target: 5'- --gGGAGGCgacCGUCGAgGCCcUCUGCg -3' miRNA: 3'- gagCCUCCG---GUAGCUgCGGuAGAUGg -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 127226 | 0.7 | 0.730375 |
Target: 5'- -cCGcGGGGCCGUCacacGCGCCAgcUCUugCg -3' miRNA: 3'- gaGC-CUCCGGUAGc---UGCGGU--AGAugG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 86936 | 0.7 | 0.730375 |
Target: 5'- -cUGGAGucCCAgcUCGGCGCCAUCgucucgGCCg -3' miRNA: 3'- gaGCCUCc-GGU--AGCUGCGGUAGa-----UGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 97907 | 0.7 | 0.730375 |
Target: 5'- -aCGGAGGCgCG--GAUGCCGUCgccGCCg -3' miRNA: 3'- gaGCCUCCG-GUagCUGCGGUAGa--UGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 136939 | 0.7 | 0.730375 |
Target: 5'- -cCGGGcGCCGaCGGCGCCGUCcugcGCCg -3' miRNA: 3'- gaGCCUcCGGUaGCUGCGGUAGa---UGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 3859 | 0.7 | 0.740141 |
Target: 5'- --gGGAGGCCGgagggGGCGCCcgCcGCCg -3' miRNA: 3'- gagCCUCCGGUag---CUGCGGuaGaUGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 111862 | 0.7 | 0.740141 |
Target: 5'- gCUCGGggucgcAGGCCGUCu-CGCCGUC-GCUg -3' miRNA: 3'- -GAGCC------UCCGGUAGcuGCGGUAGaUGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 19760 | 0.7 | 0.749813 |
Target: 5'- --aGGucGCCGUCGAgGUCAUCgucGCCg -3' miRNA: 3'- gagCCucCGGUAGCUgCGGUAGa--UGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 3398 | 0.7 | 0.730375 |
Target: 5'- cCUCGGAGGgCcgCGGCGUguggGUCUcGCCg -3' miRNA: 3'- -GAGCCUCCgGuaGCUGCGg---UAGA-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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