miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29388 3' -55.6 NC_006151.1 + 117529 0.7 0.724475
Target:  5'- gCUCGGGGGCCcccucccacgcggCGACGCgCcgCgGCCa -3'
miRNA:   3'- -GAGCCUCCGGua-----------GCUGCG-GuaGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 6223 0.7 0.730375
Target:  5'- -cCGGAGGagCcgCGGCGCCGggagcccuggCUGCCg -3'
miRNA:   3'- gaGCCUCCg-GuaGCUGCGGUa---------GAUGG- -5'
29388 3' -55.6 NC_006151.1 + 136939 0.7 0.730375
Target:  5'- -cCGGGcGCCGaCGGCGCCGUCcugcGCCg -3'
miRNA:   3'- gaGCCUcCGGUaGCUGCGGUAGa---UGG- -5'
29388 3' -55.6 NC_006151.1 + 19760 0.7 0.749813
Target:  5'- --aGGucGCCGUCGAgGUCAUCgucGCCg -3'
miRNA:   3'- gagCCucCGGUAGCUgCGGUAGa--UGG- -5'
29388 3' -55.6 NC_006151.1 + 37889 0.7 0.730375
Target:  5'- --gGGAGGCgacCGUCGAgGCCcUCUGCg -3'
miRNA:   3'- gagCCUCCG---GUAGCUgCGGuAGAUGg -5'
29388 3' -55.6 NC_006151.1 + 86319 0.7 0.759382
Target:  5'- -cUGGGGGCCGugcUCGcccGCGCCGUggGCCc -3'
miRNA:   3'- gaGCCUCCGGU---AGC---UGCGGUAgaUGG- -5'
29388 3' -55.6 NC_006151.1 + 52331 0.7 0.717555
Target:  5'- uCUCGcugagcgccgcaaaGAGGUCGUCGuCGUCGUCcGCCg -3'
miRNA:   3'- -GAGC--------------CUCCGGUAGCuGCGGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 127226 0.7 0.730375
Target:  5'- -cCGcGGGGCCGUCacacGCGCCAgcUCUugCg -3'
miRNA:   3'- gaGC-CUCCGGUAGc---UGCGGU--AGAugG- -5'
29388 3' -55.6 NC_006151.1 + 111862 0.7 0.740141
Target:  5'- gCUCGGggucgcAGGCCGUCu-CGCCGUC-GCUg -3'
miRNA:   3'- -GAGCC------UCCGGUAGcuGCGGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 3859 0.7 0.740141
Target:  5'- --gGGAGGCCGgagggGGCGCCcgCcGCCg -3'
miRNA:   3'- gagCCUCCGGUag---CUGCGGuaGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 97907 0.7 0.730375
Target:  5'- -aCGGAGGCgCG--GAUGCCGUCgccGCCg -3'
miRNA:   3'- gaGCCUCCG-GUagCUGCGGUAGa--UGG- -5'
29388 3' -55.6 NC_006151.1 + 86936 0.7 0.730375
Target:  5'- -cUGGAGucCCAgcUCGGCGCCAUCgucucgGCCg -3'
miRNA:   3'- gaGCCUCc-GGU--AGCUGCGGUAGa-----UGG- -5'
29388 3' -55.6 NC_006151.1 + 3398 0.7 0.730375
Target:  5'- cCUCGGAGGgCcgCGGCGUguggGUCUcGCCg -3'
miRNA:   3'- -GAGCCUCCgGuaGCUGCGg---UAGA-UGG- -5'
29388 3' -55.6 NC_006151.1 + 48391 0.69 0.814128
Target:  5'- -cCGGAGGUCAUCcuGugGgCGUCgggcACCg -3'
miRNA:   3'- gaGCCUCCGGUAG--CugCgGUAGa---UGG- -5'
29388 3' -55.6 NC_006151.1 + 14388 0.69 0.796447
Target:  5'- cCUCGGGGGUCG-CG-CGuCCGUC-GCCu -3'
miRNA:   3'- -GAGCCUCCGGUaGCuGC-GGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 15053 0.69 0.814128
Target:  5'- -gCGcGGGGCCc-CGGCGCCuUCUGCg -3'
miRNA:   3'- gaGC-CUCCGGuaGCUGCGGuAGAUGg -5'
29388 3' -55.6 NC_006151.1 + 131049 0.69 0.805365
Target:  5'- gUCGG-GGCCG--GAgGCCGUCUccauGCCg -3'
miRNA:   3'- gAGCCuCCGGUagCUgCGGUAGA----UGG- -5'
29388 3' -55.6 NC_006151.1 + 35458 0.69 0.796447
Target:  5'- cCUCGcGAaaucccauuGGCCggCGGcCGCCAUCUuggGCCg -3'
miRNA:   3'- -GAGC-CU---------CCGGuaGCU-GCGGUAGA---UGG- -5'
29388 3' -55.6 NC_006151.1 + 50770 0.69 0.78738
Target:  5'- cCUCGacGAcGGCCGcccCGACGCCccagCUGCCg -3'
miRNA:   3'- -GAGC--CU-CCGGUa--GCUGCGGua--GAUGG- -5'
29388 3' -55.6 NC_006151.1 + 126414 0.69 0.768839
Target:  5'- gUCGGGgcgauGGCCAcgCGcCGCCGgcaCUACCa -3'
miRNA:   3'- gAGCCU-----CCGGUa-GCuGCGGUa--GAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.