miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29388 3' -55.6 NC_006151.1 + 54739 0.67 0.891503
Target:  5'- gCUCGccGAGGCCAUgCG-CGgCGUC-ACCa -3'
miRNA:   3'- -GAGC--CUCCGGUA-GCuGCgGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 55515 0.66 0.910535
Target:  5'- cCUCGGccacgAGGUCAUCGacaucacgcGCGCCAUggGCg -3'
miRNA:   3'- -GAGCC-----UCCGGUAGC---------UGCGGUAgaUGg -5'
29388 3' -55.6 NC_006151.1 + 59565 0.76 0.408115
Target:  5'- gUCGGGGGCCAgCGcCGCCAgCUccaGCCg -3'
miRNA:   3'- gAGCCUCCGGUaGCuGCGGUaGA---UGG- -5'
29388 3' -55.6 NC_006151.1 + 60300 0.74 0.53861
Target:  5'- -aCGGAGGCCAUguccgggcCGuGCGCCAUCgGCUu -3'
miRNA:   3'- gaGCCUCCGGUA--------GC-UGCGGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 61202 0.68 0.855318
Target:  5'- -gCGGAGaGCCAUUucagcaGCGCCGUCgucuUGCCc -3'
miRNA:   3'- gaGCCUC-CGGUAGc-----UGCGGUAG----AUGG- -5'
29388 3' -55.6 NC_006151.1 + 61766 0.68 0.846657
Target:  5'- -gCGGGGGCCGUggugcugCGGCGCgAg--GCCg -3'
miRNA:   3'- gaGCCUCCGGUA-------GCUGCGgUagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 63790 0.66 0.910535
Target:  5'- -gCGGGgucGGCCGUCGccaGCGCC-UC-GCCg -3'
miRNA:   3'- gaGCCU---CCGGUAGC---UGCGGuAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 64544 0.67 0.891503
Target:  5'- gUCGGGGGCgG-CGAgGCCGUggcgcGCCa -3'
miRNA:   3'- gAGCCUCCGgUaGCUgCGGUAga---UGG- -5'
29388 3' -55.6 NC_006151.1 + 67596 0.74 0.518929
Target:  5'- gCUCGGAGGCgaCGUCGACG--AUCUugCg -3'
miRNA:   3'- -GAGCCUCCG--GUAGCUGCggUAGAugG- -5'
29388 3' -55.6 NC_006151.1 + 70710 0.67 0.86298
Target:  5'- cCUCGGuGGCCAac--CGCCGcCUGCUg -3'
miRNA:   3'- -GAGCCuCCGGUagcuGCGGUaGAUGG- -5'
29388 3' -55.6 NC_006151.1 + 70797 0.74 0.528736
Target:  5'- -cCGGcguGGCCGUCGugGgCAgCUACCg -3'
miRNA:   3'- gaGCCu--CCGGUAGCugCgGUaGAUGG- -5'
29388 3' -55.6 NC_006151.1 + 70994 0.78 0.313309
Target:  5'- aCUCGGccguGGCCAUCGuggGCGCCAUgcGCCg -3'
miRNA:   3'- -GAGCCu---CCGGUAGC---UGCGGUAgaUGG- -5'
29388 3' -55.6 NC_006151.1 + 71291 0.71 0.700607
Target:  5'- cCUCGGGGGCCggCGAgcacCG-CGUCUucACCg -3'
miRNA:   3'- -GAGCCUCCGGuaGCU----GCgGUAGA--UGG- -5'
29388 3' -55.6 NC_006151.1 + 71648 0.72 0.638737
Target:  5'- gUCgGGGGGCCGUCGaagaugcacacgcGCGCCAcggGCCg -3'
miRNA:   3'- gAG-CCUCCGGUAGC-------------UGCGGUagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 75421 0.68 0.855318
Target:  5'- --gGGAGGCCcggcGUgGGCGCgAagCUGCCg -3'
miRNA:   3'- gagCCUCCGG----UAgCUGCGgUa-GAUGG- -5'
29388 3' -55.6 NC_006151.1 + 75651 0.67 0.870435
Target:  5'- gUCGGGGGCCGgcUCGcCGCCGa----- -3'
miRNA:   3'- gAGCCUCCGGU--AGCuGCGGUagaugg -5'
29388 3' -55.6 NC_006151.1 + 78104 0.68 0.855318
Target:  5'- cCUCGu-GGCCGgggCgGACGCCAUcCUGCg -3'
miRNA:   3'- -GAGCcuCCGGUa--G-CUGCGGUA-GAUGg -5'
29388 3' -55.6 NC_006151.1 + 78160 0.68 0.831151
Target:  5'- cCUCGGccGCCgugGUCGAgGCCGUgUccGCCg -3'
miRNA:   3'- -GAGCCucCGG---UAGCUgCGGUAgA--UGG- -5'
29388 3' -55.6 NC_006151.1 + 78411 0.67 0.891503
Target:  5'- uCUCGGgccgcgAGcGCCGUgGcccACGCCGUCaACCg -3'
miRNA:   3'- -GAGCC------UC-CGGUAgC---UGCGGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 79595 0.66 0.932617
Target:  5'- -cCGGGGaGCCGgagccCGGCGCCA-CaACCc -3'
miRNA:   3'- gaGCCUC-CGGUa----GCUGCGGUaGaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.