Results 61 - 80 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29388 | 3' | -55.6 | NC_006151.1 | + | 86319 | 0.7 | 0.759382 |
Target: 5'- -cUGGGGGCCGugcUCGcccGCGCCGUggGCCc -3' miRNA: 3'- gaGCCUCCGGU---AGC---UGCGGUAgaUGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 86539 | 0.68 | 0.839397 |
Target: 5'- cCUCGcccGAGGCCGccgUGGCGCCGUU--CCg -3' miRNA: 3'- -GAGC---CUCCGGUa--GCUGCGGUAGauGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 86936 | 0.7 | 0.730375 |
Target: 5'- -cUGGAGucCCAgcUCGGCGCCAUCgucucgGCCg -3' miRNA: 3'- gaGCCUCc-GGU--AGCUGCGGUAGa-----UGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 87578 | 0.68 | 0.831151 |
Target: 5'- -gCGGAcgucuccgccGGCacCAUCGACGCCAgcUCgGCCg -3' miRNA: 3'- gaGCCU----------CCG--GUAGCUGCGGU--AGaUGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 91921 | 0.76 | 0.399556 |
Target: 5'- gCUCGGAGGCCAUCuccACGCC----GCCg -3' miRNA: 3'- -GAGCCUCCGGUAGc--UGCGGuagaUGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 92124 | 0.66 | 0.916411 |
Target: 5'- uUCGGGaacGGCCGcaucgcgcgCGGCGCCAag-GCCa -3' miRNA: 3'- gAGCCU---CCGGUa--------GCUGCGGUagaUGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 92316 | 0.72 | 0.639758 |
Target: 5'- -aUGGAGGCggacgaCGUCuGCGCCAaccUCUACCa -3' miRNA: 3'- gaGCCUCCG------GUAGcUGCGGU---AGAUGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 93957 | 0.66 | 0.932617 |
Target: 5'- -aCGGAGGCgCAcucggCGACGCgcgaGUCgaGCCa -3' miRNA: 3'- gaGCCUCCG-GUa----GCUGCGg---UAGa-UGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 94246 | 0.67 | 0.86298 |
Target: 5'- gCUCGGGcucgcugagcgcGGCCAcguccUUGGCGUCGUCgcCCa -3' miRNA: 3'- -GAGCCU------------CCGGU-----AGCUGCGGUAGauGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 95758 | 0.69 | 0.814128 |
Target: 5'- -gCGGAGGCUcucGUCGGCGgCGagcaUGCCg -3' miRNA: 3'- gaGCCUCCGG---UAGCUGCgGUag--AUGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 96751 | 0.72 | 0.629547 |
Target: 5'- -aCGGAGGCCAU-GGCGgCGUgUGCUc -3' miRNA: 3'- gaGCCUCCGGUAgCUGCgGUAgAUGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 97550 | 0.76 | 0.425572 |
Target: 5'- -gCGGAGGCCGUCGuCGCC----GCCg -3' miRNA: 3'- gaGCCUCCGGUAGCuGCGGuagaUGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 97907 | 0.7 | 0.730375 |
Target: 5'- -aCGGAGGCgCG--GAUGCCGUCgccGCCg -3' miRNA: 3'- gaGCCUCCG-GUagCUGCGGUAGa--UGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 98273 | 0.72 | 0.609139 |
Target: 5'- gCUCgaGGAGGCCGaCcACGCCGUC-GCCa -3' miRNA: 3'- -GAG--CCUCCGGUaGcUGCGGUAGaUGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 98581 | 0.66 | 0.910535 |
Target: 5'- cCUCGGccgaguucGGCCc-CGACGCCAUgUuCCg -3' miRNA: 3'- -GAGCCu-------CCGGuaGCUGCGGUAgAuGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 99359 | 0.71 | 0.660154 |
Target: 5'- -aCGGcGGUCGUCGGCGgCGUCgugcACCg -3' miRNA: 3'- gaGCCuCCGGUAGCUGCgGUAGa---UGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 99832 | 0.7 | 0.720525 |
Target: 5'- gUCGuGAcGGCCGUggcCGACGCCuacaaCUGCCu -3' miRNA: 3'- gAGC-CU-CCGGUA---GCUGCGGua---GAUGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 100972 | 0.72 | 0.639758 |
Target: 5'- aUCGGcuccuGGCCgagGUCGACGCCGUgU-CCa -3' miRNA: 3'- gAGCCu----CCGG---UAGCUGCGGUAgAuGG- -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 101170 | 0.67 | 0.891503 |
Target: 5'- -gUGGAGGCCGcccugacggcCGACGCCGUggACg -3' miRNA: 3'- gaGCCUCCGGUa---------GCUGCGGUAgaUGg -5' |
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29388 | 3' | -55.6 | NC_006151.1 | + | 101443 | 0.68 | 0.839397 |
Target: 5'- -cUGGucGUgGUCGGCGCCGugggccugggccUCUACCg -3' miRNA: 3'- gaGCCucCGgUAGCUGCGGU------------AGAUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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