miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29388 3' -55.6 NC_006151.1 + 103783 0.67 0.86298
Target:  5'- gUCGGAGcGCUggCGGCGCUgcaggccgcgcuGUCggcgGCCg -3'
miRNA:   3'- gAGCCUC-CGGuaGCUGCGG------------UAGa---UGG- -5'
29388 3' -55.6 NC_006151.1 + 102229 0.66 0.916411
Target:  5'- --gGGAGGCgCcgUG-CGCCGUC-GCCg -3'
miRNA:   3'- gagCCUCCG-GuaGCuGCGGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 101786 0.67 0.884701
Target:  5'- -cCGG-GGCCAUCccguccuCGCCGUC-GCCc -3'
miRNA:   3'- gaGCCuCCGGUAGcu-----GCGGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 101443 0.68 0.839397
Target:  5'- -cUGGucGUgGUCGGCGCCGugggccugggccUCUACCg -3'
miRNA:   3'- gaGCCucCGgUAGCUGCGGU------------AGAUGG- -5'
29388 3' -55.6 NC_006151.1 + 101170 0.67 0.891503
Target:  5'- -gUGGAGGCCGcccugacggcCGACGCCGUggACg -3'
miRNA:   3'- gaGCCUCCGGUa---------GCUGCGGUAgaUGg -5'
29388 3' -55.6 NC_006151.1 + 100972 0.72 0.639758
Target:  5'- aUCGGcuccuGGCCgagGUCGACGCCGUgU-CCa -3'
miRNA:   3'- gAGCCu----CCGG---UAGCUGCGGUAgAuGG- -5'
29388 3' -55.6 NC_006151.1 + 99832 0.7 0.720525
Target:  5'- gUCGuGAcGGCCGUggcCGACGCCuacaaCUGCCu -3'
miRNA:   3'- gAGC-CU-CCGGUA---GCUGCGGua---GAUGG- -5'
29388 3' -55.6 NC_006151.1 + 99359 0.71 0.660154
Target:  5'- -aCGGcGGUCGUCGGCGgCGUCgugcACCg -3'
miRNA:   3'- gaGCCuCCGGUAGCUGCgGUAGa---UGG- -5'
29388 3' -55.6 NC_006151.1 + 98581 0.66 0.910535
Target:  5'- cCUCGGccgaguucGGCCc-CGACGCCAUgUuCCg -3'
miRNA:   3'- -GAGCCu-------CCGGuaGCUGCGGUAgAuGG- -5'
29388 3' -55.6 NC_006151.1 + 98273 0.72 0.609139
Target:  5'- gCUCgaGGAGGCCGaCcACGCCGUC-GCCa -3'
miRNA:   3'- -GAG--CCUCCGGUaGcUGCGGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 97907 0.7 0.730375
Target:  5'- -aCGGAGGCgCG--GAUGCCGUCgccGCCg -3'
miRNA:   3'- gaGCCUCCG-GUagCUGCGGUAGa--UGG- -5'
29388 3' -55.6 NC_006151.1 + 97550 0.76 0.425572
Target:  5'- -gCGGAGGCCGUCGuCGCC----GCCg -3'
miRNA:   3'- gaGCCUCCGGUAGCuGCGGuagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 96751 0.72 0.629547
Target:  5'- -aCGGAGGCCAU-GGCGgCGUgUGCUc -3'
miRNA:   3'- gaGCCUCCGGUAgCUGCgGUAgAUGG- -5'
29388 3' -55.6 NC_006151.1 + 95758 0.69 0.814128
Target:  5'- -gCGGAGGCUcucGUCGGCGgCGagcaUGCCg -3'
miRNA:   3'- gaGCCUCCGG---UAGCUGCgGUag--AUGG- -5'
29388 3' -55.6 NC_006151.1 + 94246 0.67 0.86298
Target:  5'- gCUCGGGcucgcugagcgcGGCCAcguccUUGGCGUCGUCgcCCa -3'
miRNA:   3'- -GAGCCU------------CCGGU-----AGCUGCGGUAGauGG- -5'
29388 3' -55.6 NC_006151.1 + 93957 0.66 0.932617
Target:  5'- -aCGGAGGCgCAcucggCGACGCgcgaGUCgaGCCa -3'
miRNA:   3'- gaGCCUCCG-GUa----GCUGCGg---UAGa-UGG- -5'
29388 3' -55.6 NC_006151.1 + 92316 0.72 0.639758
Target:  5'- -aUGGAGGCggacgaCGUCuGCGCCAaccUCUACCa -3'
miRNA:   3'- gaGCCUCCG------GUAGcUGCGGU---AGAUGG- -5'
29388 3' -55.6 NC_006151.1 + 92124 0.66 0.916411
Target:  5'- uUCGGGaacGGCCGcaucgcgcgCGGCGCCAag-GCCa -3'
miRNA:   3'- gAGCCU---CCGGUa--------GCUGCGGUagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 91921 0.76 0.399556
Target:  5'- gCUCGGAGGCCAUCuccACGCC----GCCg -3'
miRNA:   3'- -GAGCCUCCGGUAGc--UGCGGuagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 87578 0.68 0.831151
Target:  5'- -gCGGAcgucuccgccGGCacCAUCGACGCCAgcUCgGCCg -3'
miRNA:   3'- gaGCCU----------CCG--GUAGCUGCGGU--AGaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.