miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29388 3' -55.6 NC_006151.1 + 5010 0.66 0.932617
Target:  5'- -gCGGGGGCCGggcgggcucCGGgGCCGgg-GCCg -3'
miRNA:   3'- gaGCCUCCGGUa--------GCUgCGGUagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 44683 0.66 0.932617
Target:  5'- -aCGGcGGCCggCGGCugaccguaCCAUCUGCUg -3'
miRNA:   3'- gaGCCuCCGGuaGCUGc-------GGUAGAUGG- -5'
29388 3' -55.6 NC_006151.1 + 53109 0.66 0.932617
Target:  5'- --gGGAGGCCGuacUCGAgCGCCuucaugagCUcGCCg -3'
miRNA:   3'- gagCCUCCGGU---AGCU-GCGGua------GA-UGG- -5'
29388 3' -55.6 NC_006151.1 + 93957 0.66 0.932617
Target:  5'- -aCGGAGGCgCAcucggCGACGCgcgaGUCgaGCCa -3'
miRNA:   3'- gaGCCUCCG-GUa----GCUGCGg---UAGa-UGG- -5'
29388 3' -55.6 NC_006151.1 + 116851 0.66 0.932617
Target:  5'- uCUCGGcggcggggaAGGCCgcGUCGuCGCCGgcCUugCa -3'
miRNA:   3'- -GAGCC---------UCCGG--UAGCuGCGGUa-GAugG- -5'
29388 3' -55.6 NC_006151.1 + 98581 0.66 0.910535
Target:  5'- cCUCGGccgaguucGGCCc-CGACGCCAUgUuCCg -3'
miRNA:   3'- -GAGCCu-------CCGGuaGCUGCGGUAgAuGG- -5'
29388 3' -55.6 NC_006151.1 + 63790 0.66 0.910535
Target:  5'- -gCGGGgucGGCCGUCGccaGCGCC-UC-GCCg -3'
miRNA:   3'- gaGCCU---CCGGUAGC---UGCGGuAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 109184 0.67 0.891503
Target:  5'- -cUGGAGGgagUCGUCG-UGCC-UCUGCCg -3'
miRNA:   3'- gaGCCUCC---GGUAGCuGCGGuAGAUGG- -5'
29388 3' -55.6 NC_006151.1 + 19607 0.67 0.897431
Target:  5'- --aGGAacguccagaucccGGCCAccaCGGCGCCGUC-GCCg -3'
miRNA:   3'- gagCCU-------------CCGGUa--GCUGCGGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 2116 0.67 0.898078
Target:  5'- -gCGGGgccGGCCGUCGcCGCCG-CggacGCCg -3'
miRNA:   3'- gaGCCU---CCGGUAGCuGCGGUaGa---UGG- -5'
29388 3' -55.6 NC_006151.1 + 2169 0.67 0.898078
Target:  5'- cCUCGccGGGGCCGgcccCGGCGCCcgagGCCc -3'
miRNA:   3'- -GAGC--CUCCGGUa---GCUGCGGuagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 39805 0.67 0.898078
Target:  5'- -cUGGGGGC--UCGGCGCCccgCUGCg -3'
miRNA:   3'- gaGCCUCCGguAGCUGCGGua-GAUGg -5'
29388 3' -55.6 NC_006151.1 + 130122 0.66 0.902544
Target:  5'- -cCGGGuucuGGCCGUgGGCGCgCGccagcagguacaccUCUGCCa -3'
miRNA:   3'- gaGCCU----CCGGUAgCUGCG-GU--------------AGAUGG- -5'
29388 3' -55.6 NC_006151.1 + 126078 0.66 0.904423
Target:  5'- -aCGGGGGCCGU-GAUcucgGCCGUCgGCg -3'
miRNA:   3'- gaGCCUCCGGUAgCUG----CGGUAGaUGg -5'
29388 3' -55.6 NC_006151.1 + 127548 0.66 0.904423
Target:  5'- --aGGGGGCgucguCGUCGugGCCG-CcGCCg -3'
miRNA:   3'- gagCCUCCG-----GUAGCugCGGUaGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 129537 0.66 0.904423
Target:  5'- --gGGGGGCCcggGGcCGCCGUCaACCg -3'
miRNA:   3'- gagCCUCCGGuagCU-GCGGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 132627 0.66 0.904423
Target:  5'- gCUCGcGuccGCCGUCGGCGCCcgg-ACCu -3'
miRNA:   3'- -GAGC-Cuc-CGGUAGCUGCGGuagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 106607 0.66 0.904423
Target:  5'- -cCGGAGGCgaacgccgCGUaCGACGCCgcgGUC-ACCg -3'
miRNA:   3'- gaGCCUCCG--------GUA-GCUGCGG---UAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 55515 0.66 0.910535
Target:  5'- cCUCGGccacgAGGUCAUCGacaucacgcGCGCCAUggGCg -3'
miRNA:   3'- -GAGCC-----UCCGGUAGC---------UGCGGUAgaUGg -5'
29388 3' -55.6 NC_006151.1 + 19293 0.66 0.910535
Target:  5'- -cCGG-GGCCAgCGGCGCgGgcgGCCg -3'
miRNA:   3'- gaGCCuCCGGUaGCUGCGgUagaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.