miRNA display CGI


Results 81 - 100 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29388 3' -55.6 NC_006151.1 + 70710 0.67 0.86298
Target:  5'- cCUCGGuGGCCAac--CGCCGcCUGCUg -3'
miRNA:   3'- -GAGCCuCCGGUagcuGCGGUaGAUGG- -5'
29388 3' -55.6 NC_006151.1 + 94246 0.67 0.86298
Target:  5'- gCUCGGGcucgcugagcgcGGCCAcguccUUGGCGUCGUCgcCCa -3'
miRNA:   3'- -GAGCCU------------CCGGU-----AGCUGCGGUAGauGG- -5'
29388 3' -55.6 NC_006151.1 + 78104 0.68 0.855318
Target:  5'- cCUCGu-GGCCGgggCgGACGCCAUcCUGCg -3'
miRNA:   3'- -GAGCcuCCGGUa--G-CUGCGGUA-GAUGg -5'
29388 3' -55.6 NC_006151.1 + 75421 0.68 0.855318
Target:  5'- --gGGAGGCCcggcGUgGGCGCgAagCUGCCg -3'
miRNA:   3'- gagCCUCCGG----UAgCUGCGgUa-GAUGG- -5'
29388 3' -55.6 NC_006151.1 + 22221 0.68 0.855318
Target:  5'- -gCGaGGGGaCCGUCGucaGCGUCAgCUGCCa -3'
miRNA:   3'- gaGC-CUCC-GGUAGC---UGCGGUaGAUGG- -5'
29388 3' -55.6 NC_006151.1 + 61202 0.68 0.855318
Target:  5'- -gCGGAGaGCCAUUucagcaGCGCCGUCgucuUGCCc -3'
miRNA:   3'- gaGCCUC-CGGUAGc-----UGCGGUAG----AUGG- -5'
29388 3' -55.6 NC_006151.1 + 5789 0.68 0.847455
Target:  5'- -gCGGGGGaCCAUCucCGCgGggCUGCCg -3'
miRNA:   3'- gaGCCUCC-GGUAGcuGCGgUa-GAUGG- -5'
29388 3' -55.6 NC_006151.1 + 20400 0.67 0.870435
Target:  5'- -cCGG-GGUCAUCGcCGUCGUC-GCCc -3'
miRNA:   3'- gaGCCuCCGGUAGCuGCGGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 75651 0.67 0.870435
Target:  5'- gUCGGGGGCCGgcUCGcCGCCGa----- -3'
miRNA:   3'- gAGCCUCCGGU--AGCuGCGGUagaugg -5'
29388 3' -55.6 NC_006151.1 + 48767 0.67 0.877677
Target:  5'- -aCGGGGGCC---GACGCC-UCcGCCc -3'
miRNA:   3'- gaGCCUCCGGuagCUGCGGuAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 2116 0.67 0.898078
Target:  5'- -gCGGGgccGGCCGUCGcCGCCG-CggacGCCg -3'
miRNA:   3'- gaGCCU---CCGGUAGCuGCGGUaGa---UGG- -5'
29388 3' -55.6 NC_006151.1 + 19607 0.67 0.897431
Target:  5'- --aGGAacguccagaucccGGCCAccaCGGCGCCGUC-GCCg -3'
miRNA:   3'- gagCCU-------------CCGGUa--GCUGCGGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 109184 0.67 0.891503
Target:  5'- -cUGGAGGgagUCGUCG-UGCC-UCUGCCg -3'
miRNA:   3'- gaGCCUCC---GGUAGCuGCGGuAGAUGG- -5'
29388 3' -55.6 NC_006151.1 + 101170 0.67 0.891503
Target:  5'- -gUGGAGGCCGcccugacggcCGACGCCGUggACg -3'
miRNA:   3'- gaGCCUCCGGUa---------GCUGCGGUAgaUGg -5'
29388 3' -55.6 NC_006151.1 + 78411 0.67 0.891503
Target:  5'- uCUCGGgccgcgAGcGCCGUgGcccACGCCGUCaACCg -3'
miRNA:   3'- -GAGCC------UC-CGGUAgC---UGCGGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 64544 0.67 0.891503
Target:  5'- gUCGGGGGCgG-CGAgGCCGUggcgcGCCa -3'
miRNA:   3'- gAGCCUCCGgUaGCUgCGGUAga---UGG- -5'
29388 3' -55.6 NC_006151.1 + 125111 0.67 0.891503
Target:  5'- -gCGGGGGCUucGUgGugGCCuUCcGCCc -3'
miRNA:   3'- gaGCCUCCGG--UAgCugCGGuAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 54739 0.67 0.891503
Target:  5'- gCUCGccGAGGCCAUgCG-CGgCGUC-ACCa -3'
miRNA:   3'- -GAGC--CUCCGGUA-GCuGCgGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 101786 0.67 0.884701
Target:  5'- -cCGG-GGCCAUCccguccuCGCCGUC-GCCc -3'
miRNA:   3'- gaGCCuCCGGUAGcu-----GCGGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 39579 0.67 0.884701
Target:  5'- -cCGG-GGCCGagcCGcuGCGCC-UCUGCCg -3'
miRNA:   3'- gaGCCuCCGGUa--GC--UGCGGuAGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.