Results 61 - 80 of 107 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29389 | 3' | -57.4 | NC_006151.1 | + | 122375 | 0.67 | 0.800927 |
Target: 5'- gGGCUCga--CGaggCGCGcCGCGGGCg -3' miRNA: 3'- -CCGAGgaagGCgaaGUGCaGCGCCCG- -5' |
|||||||
29389 | 3' | -57.4 | NC_006151.1 | + | 123365 | 0.67 | 0.800927 |
Target: 5'- cGCUCCUUCCgGCcgUCACGcgcaaguucuUCGagcucgucaaCGGGCc -3' miRNA: 3'- cCGAGGAAGG-CGa-AGUGC----------AGC----------GCCCG- -5' |
|||||||
29389 | 3' | -57.4 | NC_006151.1 | + | 131112 | 0.67 | 0.800927 |
Target: 5'- gGGC-CCggCCGCggCGCGggaggcCGCGGcGCc -3' miRNA: 3'- -CCGaGGaaGGCGaaGUGCa-----GCGCC-CG- -5' |
|||||||
29389 | 3' | -57.4 | NC_006151.1 | + | 73698 | 0.67 | 0.809647 |
Target: 5'- cGGCUCUgcgCCGCgugCugGgccaCGGGCu -3' miRNA: 3'- -CCGAGGaa-GGCGaa-GugCagc-GCCCG- -5' |
|||||||
29389 | 3' | -57.4 | NC_006151.1 | + | 127310 | 0.67 | 0.809647 |
Target: 5'- aGGCcgUCgUCCGCg-CGgGUcCGCGGGCg -3' miRNA: 3'- -CCGa-GGaAGGCGaaGUgCA-GCGCCCG- -5' |
|||||||
29389 | 3' | -57.4 | NC_006151.1 | + | 97246 | 0.67 | 0.809647 |
Target: 5'- uGGCg-CggCCGCg-CAUGUCGgGGGCc -3' miRNA: 3'- -CCGagGaaGGCGaaGUGCAGCgCCCG- -5' |
|||||||
29389 | 3' | -57.4 | NC_006151.1 | + | 22771 | 0.67 | 0.818211 |
Target: 5'- cGGCU-CUUCUGCUgggccUCGCGcacgUGCuGGGCc -3' miRNA: 3'- -CCGAgGAAGGCGA-----AGUGCa---GCG-CCCG- -5' |
|||||||
29389 | 3' | -57.4 | NC_006151.1 | + | 99653 | 0.67 | 0.826611 |
Target: 5'- uGGCUcgCCUUCCGCgcgCAgaGcCGCugGGGCc -3' miRNA: 3'- -CCGA--GGAAGGCGaa-GUg-CaGCG--CCCG- -5' |
|||||||
29389 | 3' | -57.4 | NC_006151.1 | + | 67167 | 0.67 | 0.826611 |
Target: 5'- uGGUUCCUggucCCGCUcaUCGCccUCGCGcuGGCc -3' miRNA: 3'- -CCGAGGAa---GGCGA--AGUGc-AGCGC--CCG- -5' |
|||||||
29389 | 3' | -57.4 | NC_006151.1 | + | 90955 | 0.67 | 0.826611 |
Target: 5'- gGGCUCCgUCgCGCcgacCGCGUCGaCGcccuGGCg -3' miRNA: 3'- -CCGAGGaAG-GCGaa--GUGCAGC-GC----CCG- -5' |
|||||||
29389 | 3' | -57.4 | NC_006151.1 | + | 99222 | 0.67 | 0.83484 |
Target: 5'- aGGCcagcgCCUcgCCGCUgCAgGUCGUGGagGCg -3' miRNA: 3'- -CCGa----GGAa-GGCGAaGUgCAGCGCC--CG- -5' |
|||||||
29389 | 3' | -57.4 | NC_006151.1 | + | 5409 | 0.67 | 0.83484 |
Target: 5'- cGGCgaggCCgagUCCGUccucguccUUCuCGgggcCGCGGGCg -3' miRNA: 3'- -CCGa---GGa--AGGCG--------AAGuGCa---GCGCCCG- -5' |
|||||||
29389 | 3' | -57.4 | NC_006151.1 | + | 33898 | 0.67 | 0.83484 |
Target: 5'- gGGCgggggCCU-CgCGCcucCGCGUCcgGCGGGCg -3' miRNA: 3'- -CCGa----GGAaG-GCGaa-GUGCAG--CGCCCG- -5' |
|||||||
29389 | 3' | -57.4 | NC_006151.1 | + | 3591 | 0.66 | 0.842891 |
Target: 5'- gGGCcCCcggUCCuCUUCGuCGUCGCGguGGCc -3' miRNA: 3'- -CCGaGGa--AGGcGAAGU-GCAGCGC--CCG- -5' |
|||||||
29389 | 3' | -57.4 | NC_006151.1 | + | 61442 | 0.66 | 0.842891 |
Target: 5'- cGGCgcccgCCcgcgUCCGCcgcCAUGU-GCGGGCc -3' miRNA: 3'- -CCGa----GGa---AGGCGaa-GUGCAgCGCCCG- -5' |
|||||||
29389 | 3' | -57.4 | NC_006151.1 | + | 131213 | 0.66 | 0.842891 |
Target: 5'- -cCUCCUcuUCCGCgucccaCGCGUCGCcgucGGCc -3' miRNA: 3'- ccGAGGA--AGGCGaa----GUGCAGCGc---CCG- -5' |
|||||||
29389 | 3' | -57.4 | NC_006151.1 | + | 14651 | 0.66 | 0.849979 |
Target: 5'- gGGCUCgggUCCGgUUCcgggucgGCGUCGgGGaGCc -3' miRNA: 3'- -CCGAGga-AGGCgAAG-------UGCAGCgCC-CG- -5' |
|||||||
29389 | 3' | -57.4 | NC_006151.1 | + | 100270 | 0.66 | 0.850757 |
Target: 5'- ---aCCUgCCGCUUCGuCuucCGCGGGCg -3' miRNA: 3'- ccgaGGAaGGCGAAGU-Gca-GCGCCCG- -5' |
|||||||
29389 | 3' | -57.4 | NC_006151.1 | + | 58712 | 0.66 | 0.856149 |
Target: 5'- cGGgUCCgccagcgcccccgugCCGC-UCGCGUCGCGcaGCg -3' miRNA: 3'- -CCgAGGaa-------------GGCGaAGUGCAGCGCc-CG- -5' |
|||||||
29389 | 3' | -57.4 | NC_006151.1 | + | 11011 | 0.66 | 0.85843 |
Target: 5'- cGGCUcgcCCgcCCGC-UCGC-UCGCcGGGCc -3' miRNA: 3'- -CCGA---GGaaGGCGaAGUGcAGCG-CCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home