miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2939 3' -59.5 NC_001493.1 + 63126 0.66 0.746546
Target:  5'- uGUGGUGGUCACCACgguGCCGuucgcucccGCGGgcuuCGCCg -3'
miRNA:   3'- -CGCCACUGGUGGUG---UGGC---------CGCU----GCGG- -5'
2939 3' -59.5 NC_001493.1 + 69618 0.67 0.740896
Target:  5'- -aGGUcgcacaGACCGCUGuCAUauucgguuacgagugCGGCGACGCCu -3'
miRNA:   3'- cgCCA------CUGGUGGU-GUG---------------GCCGCUGCGG- -5'
2939 3' -59.5 NC_001493.1 + 48354 0.67 0.737112
Target:  5'- aCGGUGGaCGCgACGCCGGCgGACa-- -3'
miRNA:   3'- cGCCACUgGUGgUGUGGCCG-CUGcgg -5'
2939 3' -59.5 NC_001493.1 + 41907 0.67 0.737112
Target:  5'- -aGGUGGCCaacgacggaugGCCAUggucacgaccgaGCCGGgcgaguccaCGGCGCCg -3'
miRNA:   3'- cgCCACUGG-----------UGGUG------------UGGCC---------GCUGCGG- -5'
2939 3' -59.5 NC_001493.1 + 32267 0.67 0.727592
Target:  5'- aCGGUGACaAUCGCGgucCCGGCGAC-Ca -3'
miRNA:   3'- cGCCACUGgUGGUGU---GGCCGCUGcGg -5'
2939 3' -59.5 NC_001493.1 + 121229 0.67 0.727592
Target:  5'- -aGGUGACCAgcuCCGCAUCGaGaGugGCa -3'
miRNA:   3'- cgCCACUGGU---GGUGUGGC-CgCugCGg -5'
2939 3' -59.5 NC_001493.1 + 5675 0.67 0.727592
Target:  5'- -aGGUGACCAgcuCCGCAUCGaGaGugGCa -3'
miRNA:   3'- cgCCACUGGU---GGUGUGGC-CgCugCGg -5'
2939 3' -59.5 NC_001493.1 + 132172 0.67 0.726636
Target:  5'- gGCGGU--UUGCCACACCGGCaucuaugGAC-CCg -3'
miRNA:   3'- -CGCCAcuGGUGGUGUGGCCG-------CUGcGG- -5'
2939 3' -59.5 NC_001493.1 + 16618 0.67 0.726636
Target:  5'- gGCGGU--UUGCCACACCGGCaucuaugGAC-CCg -3'
miRNA:   3'- -CGCCAcuGGUGGUGUGGCCG-------CUGcGG- -5'
2939 3' -59.5 NC_001493.1 + 126308 0.67 0.717995
Target:  5'- aGUGGaUGGCCGugUCguggGCAUCGGCGAUcgGCCa -3'
miRNA:   3'- -CGCC-ACUGGU--GG----UGUGGCCGCUG--CGG- -5'
2939 3' -59.5 NC_001493.1 + 55583 0.67 0.717995
Target:  5'- aUGGUGGCCuuCAuggcaucuauauCACCGGUGAUGUUc -3'
miRNA:   3'- cGCCACUGGugGU------------GUGGCCGCUGCGG- -5'
2939 3' -59.5 NC_001493.1 + 10754 0.67 0.717995
Target:  5'- aGUGGaUGGCCGugUCguggGCAUCGGCGAUcgGCCa -3'
miRNA:   3'- -CGCC-ACUGGU--GG----UGUGGCCGCUG--CGG- -5'
2939 3' -59.5 NC_001493.1 + 38383 0.67 0.717031
Target:  5'- cGUGGcucccaugGACCACCgggaggaGCACgaaGGCG-CGCCa -3'
miRNA:   3'- -CGCCa-------CUGGUGG-------UGUGg--CCGCuGCGG- -5'
2939 3' -59.5 NC_001493.1 + 28739 0.67 0.712203
Target:  5'- uCGGUGGCCGucacgaguuccccacUCACGgUGGCGAguCGCUg -3'
miRNA:   3'- cGCCACUGGU---------------GGUGUgGCCGCU--GCGG- -5'
2939 3' -59.5 NC_001493.1 + 42450 0.67 0.708328
Target:  5'- cCGGUGAaUACCAgACUGcGaCGACGCUc -3'
miRNA:   3'- cGCCACUgGUGGUgUGGC-C-GCUGCGG- -5'
2939 3' -59.5 NC_001493.1 + 63887 0.67 0.708328
Target:  5'- cGCGGUGucguugGCU-CC-CGCgGGCGuCGCCg -3'
miRNA:   3'- -CGCCAC------UGGuGGuGUGgCCGCuGCGG- -5'
2939 3' -59.5 NC_001493.1 + 63714 0.67 0.708328
Target:  5'- cGCGGUGucguugGCU-CC-CGCgGGCGuCGCCg -3'
miRNA:   3'- -CGCCAC------UGGuGGuGUGgCCGCuGCGG- -5'
2939 3' -59.5 NC_001493.1 + 63435 0.67 0.708328
Target:  5'- cGCGGUGucguugGCU-CC-CGCgGGCGuCGCCg -3'
miRNA:   3'- -CGCCAC------UGGuGGuGUGgCCGCuGCGG- -5'
2939 3' -59.5 NC_001493.1 + 31887 0.67 0.708328
Target:  5'- cGCGGUGACCGuguguuCCACgguCGGUGccgauGCGCUc -3'
miRNA:   3'- -CGCCACUGGU------GGUGug-GCCGC-----UGCGG- -5'
2939 3' -59.5 NC_001493.1 + 48740 0.67 0.708328
Target:  5'- cGCaGUGAUguggUCACACCGGUGuauuuCGCCa -3'
miRNA:   3'- -CGcCACUGgu--GGUGUGGCCGCu----GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.