Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2939 | 5' | -55.9 | NC_001493.1 | + | 24545 | 0.68 | 0.834066 |
Target: 5'- cACGGCACCguaGCGGucACGGCcguucCCGUGGa- -3' miRNA: 3'- -UGCUGUGG---CGCU--UGCUGu----GGCACCac -5' |
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2939 | 5' | -55.9 | NC_001493.1 | + | 53546 | 0.68 | 0.817161 |
Target: 5'- uCGcCACCGCgguGAugGACuCCGUGGa- -3' miRNA: 3'- uGCuGUGGCG---CUugCUGuGGCACCac -5' |
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2939 | 5' | -55.9 | NC_001493.1 | + | 30247 | 0.68 | 0.817161 |
Target: 5'- gGCGACgAUCGUGAGCaACACCGaGGg- -3' miRNA: 3'- -UGCUG-UGGCGCUUGcUGUGGCaCCac -5' |
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2939 | 5' | -55.9 | NC_001493.1 | + | 64958 | 0.68 | 0.799587 |
Target: 5'- aACGGCugCGaCGAgcGCGAUaACCGgGGUGc -3' miRNA: 3'- -UGCUGugGC-GCU--UGCUG-UGGCaCCAC- -5' |
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2939 | 5' | -55.9 | NC_001493.1 | + | 48627 | 0.69 | 0.772117 |
Target: 5'- cGCGGCgAUCGUGggUGGCACgGUcuuGGUGu -3' miRNA: 3'- -UGCUG-UGGCGCuuGCUGUGgCA---CCAC- -5' |
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2939 | 5' | -55.9 | NC_001493.1 | + | 67820 | 0.69 | 0.772117 |
Target: 5'- cACGGCAUCGCu--CGACGCCGaGGa- -3' miRNA: 3'- -UGCUGUGGCGcuuGCUGUGGCaCCac -5' |
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2939 | 5' | -55.9 | NC_001493.1 | + | 67992 | 0.69 | 0.756993 |
Target: 5'- gAUGAUGCCcaguaacuccucggcGuCGAGCGAUGCCGUGGUc -3' miRNA: 3'- -UGCUGUGG---------------C-GCUUGCUGUGGCACCAc -5' |
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2939 | 5' | -55.9 | NC_001493.1 | + | 62480 | 0.69 | 0.753167 |
Target: 5'- cCGGCucCCGCGGGCuuCGCCGUcguGGUGg -3' miRNA: 3'- uGCUGu-GGCGCUUGcuGUGGCA---CCAC- -5' |
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2939 | 5' | -55.9 | NC_001493.1 | + | 27880 | 0.7 | 0.723968 |
Target: 5'- cACGAcCACCgGCGuACGAU-CCGUGGUa -3' miRNA: 3'- -UGCU-GUGG-CGCuUGCUGuGGCACCAc -5' |
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2939 | 5' | -55.9 | NC_001493.1 | + | 116872 | 0.7 | 0.714066 |
Target: 5'- aGCGuCuCCGCGGAagcgGGCACCGcGGUGa -3' miRNA: 3'- -UGCuGuGGCGCUUg---CUGUGGCaCCAC- -5' |
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2939 | 5' | -55.9 | NC_001493.1 | + | 1318 | 0.7 | 0.714066 |
Target: 5'- aGCGuCuCCGCGGAagcgGGCACCGcGGUGa -3' miRNA: 3'- -UGCuGuGGCGCUUg---CUGUGGCaCCAC- -5' |
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2939 | 5' | -55.9 | NC_001493.1 | + | 36608 | 0.7 | 0.714066 |
Target: 5'- cACuGCGCUGCuGGugGugGCCGUGGg- -3' miRNA: 3'- -UGcUGUGGCG-CUugCugUGGCACCac -5' |
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2939 | 5' | -55.9 | NC_001493.1 | + | 46128 | 0.7 | 0.708091 |
Target: 5'- cUGACGagguuuacauuuacuCCGUGAACGGCGCCGUuGGg- -3' miRNA: 3'- uGCUGU---------------GGCGCUUGCUGUGGCA-CCac -5' |
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2939 | 5' | -55.9 | NC_001493.1 | + | 62678 | 0.71 | 0.683977 |
Target: 5'- gACGGCGaagcCCGCGGgagccaACGGCACCGUGa-- -3' miRNA: 3'- -UGCUGU----GGCGCU------UGCUGUGGCACcac -5' |
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2939 | 5' | -55.9 | NC_001493.1 | + | 62720 | 0.71 | 0.683977 |
Target: 5'- gACGGCGaagcCCGCGGgagccaACGGCACCGUGa-- -3' miRNA: 3'- -UGCUGU----GGCGCU------UGCUGUGGCACcac -5' |
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2939 | 5' | -55.9 | NC_001493.1 | + | 62762 | 0.71 | 0.683977 |
Target: 5'- gACGGCGaagcCCGCGGgagccaACGGCACCGUGa-- -3' miRNA: 3'- -UGCUGU----GGCGCU------UGCUGUGGCACcac -5' |
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2939 | 5' | -55.9 | NC_001493.1 | + | 62804 | 0.71 | 0.683977 |
Target: 5'- gACGGCGaagcCCGCGGgagccaACGGCACCGUGa-- -3' miRNA: 3'- -UGCUGU----GGCGCU------UGCUGUGGCACcac -5' |
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2939 | 5' | -55.9 | NC_001493.1 | + | 100957 | 0.72 | 0.612672 |
Target: 5'- uUGuCGCCG-GAACGACACUGUGuGUGc -3' miRNA: 3'- uGCuGUGGCgCUUGCUGUGGCAC-CAC- -5' |
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2939 | 5' | -55.9 | NC_001493.1 | + | 63058 | 0.72 | 0.602481 |
Target: 5'- uUGGCucCCGCGGGCGuCGCCGgugcGGUGg -3' miRNA: 3'- uGCUGu-GGCGCUUGCuGUGGCa---CCAC- -5' |
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2939 | 5' | -55.9 | NC_001493.1 | + | 107009 | 0.72 | 0.592313 |
Target: 5'- cACGGCGCCGUGAAuacCGAgGCgGUGuGUGu -3' miRNA: 3'- -UGCUGUGGCGCUU---GCUgUGgCAC-CAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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