miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29390 5' -56.5 NC_006151.1 + 124742 0.95 0.022884
Target:  5'- cACUACuaCCCAUCGACCUGGACUCGCGc -3'
miRNA:   3'- aUGAUG--GGGUAGCUGGACCUGAGCGC- -5'
29390 5' -56.5 NC_006151.1 + 45836 0.9 0.042983
Target:  5'- gACUGCCCCAUCuGCCUGGACgUCGCGg -3'
miRNA:   3'- aUGAUGGGGUAGcUGGACCUG-AGCGC- -5'
29390 5' -56.5 NC_006151.1 + 102049 0.8 0.213607
Target:  5'- aGCUgGCCCCGcUCGACCUGGGCcCGCu -3'
miRNA:   3'- aUGA-UGGGGU-AGCUGGACCUGaGCGc -5'
29390 5' -56.5 NC_006151.1 + 136343 0.77 0.312877
Target:  5'- ---aACCCCAgCGGCCUGGACccCGCGg -3'
miRNA:   3'- augaUGGGGUaGCUGGACCUGa-GCGC- -5'
29390 5' -56.5 NC_006151.1 + 98060 0.75 0.374318
Target:  5'- ---aGCCCCGggcgcUCGGCCUgGGGCUCGCa -3'
miRNA:   3'- augaUGGGGU-----AGCUGGA-CCUGAGCGc -5'
29390 5' -56.5 NC_006151.1 + 132565 0.73 0.490098
Target:  5'- aGCUccuCCuCCA-CGGCCgGGACUCGCGg -3'
miRNA:   3'- aUGAu--GG-GGUaGCUGGaCCUGAGCGC- -5'
29390 5' -56.5 NC_006151.1 + 140395 0.73 0.509399
Target:  5'- gUGCUGCCCgAg-GACCUgggGGACUCGCc -3'
miRNA:   3'- -AUGAUGGGgUagCUGGA---CCUGAGCGc -5'
29390 5' -56.5 NC_006151.1 + 139563 0.72 0.538924
Target:  5'- aGCggcGCCCgGUCcgcgagcGCCUGGGCUCGCGc -3'
miRNA:   3'- aUGa--UGGGgUAGc------UGGACCUGAGCGC- -5'
29390 5' -56.5 NC_006151.1 + 24426 0.71 0.5893
Target:  5'- cGC-GCCCCAgacgUCGACCuUGGugUCGUa -3'
miRNA:   3'- aUGaUGGGGU----AGCUGG-ACCugAGCGc -5'
29390 5' -56.5 NC_006151.1 + 124036 0.7 0.647611
Target:  5'- ---gGCCCCcgacggcgaguacggCGACCUGGACgCGCGg -3'
miRNA:   3'- augaUGGGGua-------------GCUGGACCUGaGCGC- -5'
29390 5' -56.5 NC_006151.1 + 117601 0.7 0.67111
Target:  5'- cGCcGCCgCAguaGACCgUGGGCUCGCGc -3'
miRNA:   3'- aUGaUGGgGUag-CUGG-ACCUGAGCGC- -5'
29390 5' -56.5 NC_006151.1 + 49156 0.69 0.721467
Target:  5'- gGCUGCCUgGa-GGCCUGGGCgcgcCGCGg -3'
miRNA:   3'- aUGAUGGGgUagCUGGACCUGa---GCGC- -5'
29390 5' -56.5 NC_006151.1 + 13720 0.69 0.741136
Target:  5'- gGCUcCCCCAUUGGCCggucccGGACgcccguccCGCGg -3'
miRNA:   3'- aUGAuGGGGUAGCUGGa-----CCUGa-------GCGC- -5'
29390 5' -56.5 NC_006151.1 + 114038 0.68 0.7699
Target:  5'- cGCUGCCCU-UCGACCUcGGcCagGCGg -3'
miRNA:   3'- aUGAUGGGGuAGCUGGA-CCuGagCGC- -5'
29390 5' -56.5 NC_006151.1 + 5557 0.68 0.788476
Target:  5'- gGCgGgCUCGUCGAgCagGGGCUCGCGg -3'
miRNA:   3'- aUGaUgGGGUAGCUgGa-CCUGAGCGC- -5'
29390 5' -56.5 NC_006151.1 + 34982 0.67 0.806488
Target:  5'- ---gGCCCCAUUGGCCgaGGGCggccaCGUGg -3'
miRNA:   3'- augaUGGGGUAGCUGGa-CCUGa----GCGC- -5'
29390 5' -56.5 NC_006151.1 + 75008 0.67 0.806488
Target:  5'- -cCUGCCCCAUC-ACCUGGggcACg-GCGa -3'
miRNA:   3'- auGAUGGGGUAGcUGGACC---UGagCGC- -5'
29390 5' -56.5 NC_006151.1 + 91251 0.67 0.806488
Target:  5'- aGCcggGCCCCGUCG-CgaGGACgccCGCGu -3'
miRNA:   3'- aUGa--UGGGGUAGCuGgaCCUGa--GCGC- -5'
29390 5' -56.5 NC_006151.1 + 106975 0.67 0.815261
Target:  5'- gACaACCCCAUCGagaacgcguGCCUGGcGC-CGCa -3'
miRNA:   3'- aUGaUGGGGUAGC---------UGGACC-UGaGCGc -5'
29390 5' -56.5 NC_006151.1 + 79395 0.67 0.815261
Target:  5'- ---gGCCCCGcgaUCGAUCUGGGCggaGCu -3'
miRNA:   3'- augaUGGGGU---AGCUGGACCUGag-CGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.