miRNA display CGI


Results 41 - 60 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29391 3' -56.6 NC_006151.1 + 84339 0.66 0.889254
Target:  5'- -gGCCU-CGCCGAGuacgucgcCGGC-CCGCGg -3'
miRNA:   3'- ugUGGAuGUGGUUCua------GCCGcGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 118356 0.66 0.889254
Target:  5'- cGCGCCUGCG---AGG-CGGCGCgCGCc -3'
miRNA:   3'- -UGUGGAUGUgguUCUaGCCGCG-GCGc -5'
29391 3' -56.6 NC_006151.1 + 129681 0.66 0.889254
Target:  5'- cGCACCguccggcCGCCGuGGAccgCGGCGCCGa- -3'
miRNA:   3'- -UGUGGau-----GUGGU-UCUa--GCCGCGGCgc -5'
29391 3' -56.6 NC_006151.1 + 130500 0.66 0.889254
Target:  5'- gGCGCCacACGCCGcgcgucucgGGcgCgGGCGUCGCGu -3'
miRNA:   3'- -UGUGGa-UGUGGU---------UCuaG-CCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 64224 0.66 0.889254
Target:  5'- gGCGCCUcggcguacaGgGCCGcGA-CGGCGgCGCGg -3'
miRNA:   3'- -UGUGGA---------UgUGGUuCUaGCCGCgGCGC- -5'
29391 3' -56.6 NC_006151.1 + 101546 0.66 0.888576
Target:  5'- cGCGCCUGCGCCcgg--CGGacguguacgcgcaCGUCGCGg -3'
miRNA:   3'- -UGUGGAUGUGGuucuaGCC-------------GCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 128518 0.66 0.888576
Target:  5'- aGCACCUcgcccgagcccgAgGCCAcggcgggcccgccGGcgCGGUGCCGCc -3'
miRNA:   3'- -UGUGGA------------UgUGGU-------------UCuaGCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 2453 0.66 0.882368
Target:  5'- cGCAgCgggGCGCCGAGcccccagCGGUugGCCGCGc -3'
miRNA:   3'- -UGUgGa--UGUGGUUCua-----GCCG--CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 22134 0.66 0.882368
Target:  5'- cCACCUGCGgguCgGAGAUCaGCGCCa-- -3'
miRNA:   3'- uGUGGAUGU---GgUUCUAGcCGCGGcgc -5'
29391 3' -56.6 NC_006151.1 + 58978 0.66 0.882368
Target:  5'- cACGCCUccgcggGCACgagCGAGAgcgCGGCGuCCaGCGg -3'
miRNA:   3'- -UGUGGA------UGUG---GUUCUa--GCCGC-GG-CGC- -5'
29391 3' -56.6 NC_006151.1 + 1833 0.66 0.882368
Target:  5'- aGCGCCgccGgGCCGAGGggaccgaGGCcgccGCCGCGg -3'
miRNA:   3'- -UGUGGa--UgUGGUUCUag-----CCG----CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 26342 0.66 0.882368
Target:  5'- cCGCCU-CACgGGGcggCGGCggGCCGCGu -3'
miRNA:   3'- uGUGGAuGUGgUUCua-GCCG--CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 61990 0.66 0.882368
Target:  5'- cACGCCUGCAagggcaCGGGugacgUGcGCGCCGCc -3'
miRNA:   3'- -UGUGGAUGUg-----GUUCua---GC-CGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 68171 0.66 0.882368
Target:  5'- cCACCaGCGCguAGG-CGGCGUCGUu -3'
miRNA:   3'- uGUGGaUGUGguUCUaGCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 111436 0.66 0.882368
Target:  5'- cGCAUCUcgGCGcgguCCAGGA--GGCGCUGCGu -3'
miRNA:   3'- -UGUGGA--UGU----GGUUCUagCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 118088 0.66 0.882368
Target:  5'- gACGCCg--AUCGAGGcgCuGCGCCGCGa -3'
miRNA:   3'- -UGUGGaugUGGUUCUa-GcCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 137575 0.66 0.882368
Target:  5'- uACACgUGCGacgacgaCGAGGUCGGgGUCGgGa -3'
miRNA:   3'- -UGUGgAUGUg------GUUCUAGCCgCGGCgC- -5'
29391 3' -56.6 NC_006151.1 + 36615 0.66 0.882368
Target:  5'- cCGCCgccGgGCCGGucUCGGCGCCcgGCGg -3'
miRNA:   3'- uGUGGa--UgUGGUUcuAGCCGCGG--CGC- -5'
29391 3' -56.6 NC_006151.1 + 102763 0.66 0.882368
Target:  5'- cGCGCaagcugGCGCUGAuGGUCGGCGacgccuCCGCGa -3'
miRNA:   3'- -UGUGga----UGUGGUU-CUAGCCGC------GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 96577 0.66 0.883067
Target:  5'- aGCGCCgccucgcggcgcgagGCGCCGGGcgCGggcGCGCCGaCGu -3'
miRNA:   3'- -UGUGGa--------------UGUGGUUCuaGC---CGCGGC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.