miRNA display CGI


Results 81 - 100 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29391 3' -56.6 NC_006151.1 + 7645 0.67 0.82826
Target:  5'- cCACCcGCGCCucgcGcUCGGCGCgCGCu -3'
miRNA:   3'- uGUGGaUGUGGuu--CuAGCCGCG-GCGc -5'
29391 3' -56.6 NC_006151.1 + 115102 0.67 0.82826
Target:  5'- -gGCC-ACGuCCAGGc-CGGCGCCGCc -3'
miRNA:   3'- ugUGGaUGU-GGUUCuaGCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 8260 0.67 0.827418
Target:  5'- cGCGCCgggACGCCccuccgggggaaaGAGuGUCcccgcgcgGGCGCCGCGu -3'
miRNA:   3'- -UGUGGa--UGUGG-------------UUC-UAG--------CCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 5713 0.67 0.827418
Target:  5'- cGCugCUggcugugcuggugGCGCCGGGGUCcgaggccGCGCCGCc -3'
miRNA:   3'- -UGugGA-------------UGUGGUUCUAGc------CGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 77217 0.67 0.819762
Target:  5'- cGCGCCgccgcgugugUGCGCCGGGA--GGCGCCccccgGCGg -3'
miRNA:   3'- -UGUGG----------AUGUGGUUCUagCCGCGG-----CGC- -5'
29391 3' -56.6 NC_006151.1 + 39131 0.67 0.819762
Target:  5'- gGCGCCccGCGCCcggccuGGGAcCcGCGCCGCGg -3'
miRNA:   3'- -UGUGGa-UGUGG------UUCUaGcCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 69689 0.67 0.83658
Target:  5'- uGCGCCU-CGCCGucGAUggUGGCcGCCGCc -3'
miRNA:   3'- -UGUGGAuGUGGUu-CUA--GCCG-CGGCGc -5'
29391 3' -56.6 NC_006151.1 + 97500 0.67 0.83658
Target:  5'- aGCGCCU-CGCgGcGGU-GGCGCUGCGu -3'
miRNA:   3'- -UGUGGAuGUGgUuCUAgCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 137116 0.67 0.83658
Target:  5'- gACGCCUggggGCGCgCGacGGcgCGGCGCgaCGCGg -3'
miRNA:   3'- -UGUGGA----UGUG-GU--UCuaGCCGCG--GCGC- -5'
29391 3' -56.6 NC_006151.1 + 78144 0.67 0.844714
Target:  5'- gGCGCCUcggacgACGCC----UCGGcCGCCGUGg -3'
miRNA:   3'- -UGUGGA------UGUGGuucuAGCC-GCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 57094 0.67 0.844714
Target:  5'- cGCACgCaGCGCCGcGAgcagCGcGCGCCGCc -3'
miRNA:   3'- -UGUG-GaUGUGGUuCUa---GC-CGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 100067 0.67 0.844714
Target:  5'- uGCGCgCggcCGCCGAGGUgcucgaggcgcCGGCGCCgGCGc -3'
miRNA:   3'- -UGUG-Gau-GUGGUUCUA-----------GCCGCGG-CGC- -5'
29391 3' -56.6 NC_006151.1 + 50156 0.67 0.844714
Target:  5'- cGCGCCcgACGagcggaCGAGcgCGGCcgGCCGCGc -3'
miRNA:   3'- -UGUGGa-UGUg-----GUUCuaGCCG--CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 140230 0.67 0.844714
Target:  5'- -aACCUGCGCCugAAGcUCGG-GCCGUu -3'
miRNA:   3'- ugUGGAUGUGG--UUCuAGCCgCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 118227 0.67 0.844714
Target:  5'- gGCGCCcggacCACCGGGcUCGGCGgCGgGc -3'
miRNA:   3'- -UGUGGau---GUGGUUCuAGCCGCgGCgC- -5'
29391 3' -56.6 NC_006151.1 + 87056 0.67 0.844714
Target:  5'- aACGCgUACuaccCCGGGGa-GGCGCCGCc -3'
miRNA:   3'- -UGUGgAUGu---GGUUCUagCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 74043 0.67 0.844714
Target:  5'- uCACCgucucCugCAGGAUCagcauGGCGuCCGCGu -3'
miRNA:   3'- uGUGGau---GugGUUCUAG-----CCGC-GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 59142 0.67 0.843909
Target:  5'- gGCGCCcGCGggcggguCCAGGc-CGGCGUCGCGc -3'
miRNA:   3'- -UGUGGaUGU-------GGUUCuaGCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 105583 0.67 0.83658
Target:  5'- cCGCCUucgACGCgCGcgcGGAgCGGCuGCCGCGg -3'
miRNA:   3'- uGUGGA---UGUG-GU---UCUaGCCG-CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 3090 0.67 0.83658
Target:  5'- gGCGgCgagcaGCGCCGAGA--GGcCGCCGCGg -3'
miRNA:   3'- -UGUgGa----UGUGGUUCUagCC-GCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.