miRNA display CGI


Results 101 - 120 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29391 3' -56.6 NC_006151.1 + 100067 0.67 0.844714
Target:  5'- uGCGCgCggcCGCCGAGGUgcucgaggcgcCGGCGCCgGCGc -3'
miRNA:   3'- -UGUG-Gau-GUGGUUCUA-----------GCCGCGG-CGC- -5'
29391 3' -56.6 NC_006151.1 + 57094 0.67 0.844714
Target:  5'- cGCACgCaGCGCCGcGAgcagCGcGCGCCGCc -3'
miRNA:   3'- -UGUG-GaUGUGGUuCUa---GC-CGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 78144 0.67 0.844714
Target:  5'- gGCGCCUcggacgACGCC----UCGGcCGCCGUGg -3'
miRNA:   3'- -UGUGGA------UGUGGuucuAGCC-GCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 52132 0.67 0.847914
Target:  5'- aACACCUcgcacccgcGCACCGAGAcgcuguccacgugcgUCucgaagGGCGCgCGCGc -3'
miRNA:   3'- -UGUGGA---------UGUGGUUCU---------------AG------CCGCG-GCGC- -5'
29391 3' -56.6 NC_006151.1 + 74043 0.67 0.844714
Target:  5'- uCACCgucucCugCAGGAUCagcauGGCGuCCGCGu -3'
miRNA:   3'- uGUGGau---GugGUUCUAG-----CCGC-GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 59142 0.67 0.843909
Target:  5'- gGCGCCcGCGggcggguCCAGGc-CGGCGUCGCGc -3'
miRNA:   3'- -UGUGGaUGU-------GGUUCuaGCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 105583 0.67 0.83658
Target:  5'- cCGCCUucgACGCgCGcgcGGAgCGGCuGCCGCGg -3'
miRNA:   3'- uGUGGA---UGUG-GU---UCUaGCCG-CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 103071 0.67 0.82826
Target:  5'- cGCACggGCACCuGGAgCGGCGCgaGCu -3'
miRNA:   3'- -UGUGgaUGUGGuUCUaGCCGCGg-CGc -5'
29391 3' -56.6 NC_006151.1 + 10926 0.67 0.83658
Target:  5'- -gGCCcacgGCGCCgAGGGUgGGCGCgCGUGu -3'
miRNA:   3'- ugUGGa---UGUGG-UUCUAgCCGCG-GCGC- -5'
29391 3' -56.6 NC_006151.1 + 39464 0.67 0.83658
Target:  5'- uGCGCCgUGCGCUGGcccgGGUGCCGCGa -3'
miRNA:   3'- -UGUGG-AUGUGGUUcuagCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 20114 0.67 0.83658
Target:  5'- gGCGCCccgGCgacgggGCUggGGggcgGGCGCCGCGg -3'
miRNA:   3'- -UGUGGa--UG------UGGuuCUag--CCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 69689 0.67 0.83658
Target:  5'- uGCGCCU-CGCCGucGAUggUGGCcGCCGCc -3'
miRNA:   3'- -UGUGGAuGUGGUu-CUA--GCCG-CGGCGc -5'
29391 3' -56.6 NC_006151.1 + 97500 0.67 0.83658
Target:  5'- aGCGCCU-CGCgGcGGU-GGCGCUGCGu -3'
miRNA:   3'- -UGUGGAuGUGgUuCUAgCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 137116 0.67 0.83658
Target:  5'- gACGCCUggggGCGCgCGacGGcgCGGCGCgaCGCGg -3'
miRNA:   3'- -UGUGGA----UGUG-GU--UCuaGCCGCG--GCGC- -5'
29391 3' -56.6 NC_006151.1 + 3090 0.67 0.83658
Target:  5'- gGCGgCgagcaGCGCCGAGA--GGcCGCCGCGg -3'
miRNA:   3'- -UGUgGa----UGUGGUUCUagCC-GCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 58196 0.68 0.802263
Target:  5'- cACGCCgugggcCACCAGGcaGUCGaaGCCGCGc -3'
miRNA:   3'- -UGUGGau----GUGGUUC--UAGCcgCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 81390 0.68 0.802263
Target:  5'- cGCGCCgcgGCGCCcAGGUUGGCcaggGUgGCGu -3'
miRNA:   3'- -UGUGGa--UGUGGuUCUAGCCG----CGgCGC- -5'
29391 3' -56.6 NC_006151.1 + 99227 0.68 0.802263
Target:  5'- aGCGCCU-CGCCGcugcAGGUCguggaGGCGCuCGUGa -3'
miRNA:   3'- -UGUGGAuGUGGU----UCUAG-----CCGCG-GCGC- -5'
29391 3' -56.6 NC_006151.1 + 105406 0.68 0.802263
Target:  5'- cGCGCCUGCccGCCAAGuUCGuGgGgCGCa -3'
miRNA:   3'- -UGUGGAUG--UGGUUCuAGC-CgCgGCGc -5'
29391 3' -56.6 NC_006151.1 + 39568 0.68 0.802263
Target:  5'- cCGCCUGCACCccGGGGcCGaGCcGCUGCGc -3'
miRNA:   3'- uGUGGAUGUGG--UUCUaGC-CG-CGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.