miRNA display CGI


Results 121 - 140 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29391 3' -56.6 NC_006151.1 + 138816 0.68 0.778606
Target:  5'- -gGCCUucguguacgcGCGCCAGGAgCGGCGCauguuuggccccuucCGCGa -3'
miRNA:   3'- ugUGGA----------UGUGGUUCUaGCCGCG---------------GCGC- -5'
29391 3' -56.6 NC_006151.1 + 95383 0.68 0.774884
Target:  5'- gACGCCguucuCGCCGGGcgUGGC-CCGCu -3'
miRNA:   3'- -UGUGGau---GUGGUUCuaGCCGcGGCGc -5'
29391 3' -56.6 NC_006151.1 + 107708 0.68 0.765491
Target:  5'- cCGCCgGCACCAAGGc---CGCCGCGg -3'
miRNA:   3'- uGUGGaUGUGGUUCUagccGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 104340 0.68 0.765491
Target:  5'- gGCGCCcguCAUCGGGucgcucuUCGGCGCCGaCa -3'
miRNA:   3'- -UGUGGau-GUGGUUCu------AGCCGCGGC-Gc -5'
29391 3' -56.6 NC_006151.1 + 87166 0.68 0.765491
Target:  5'- gACGCCguacuacGCGCCcg---CGGCGCCGCc -3'
miRNA:   3'- -UGUGGa------UGUGGuucuaGCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 99519 0.68 0.765491
Target:  5'- uGCGCC-ACugCA----UGGCGCCGCGc -3'
miRNA:   3'- -UGUGGaUGugGUucuaGCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 78693 0.68 0.765491
Target:  5'- uACGCCg--GCCGGGGccUCGuCGCCGCGa -3'
miRNA:   3'- -UGUGGaugUGGUUCU--AGCcGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 81992 0.68 0.793278
Target:  5'- uGCACCacgGCgGCCAGGGcggccgCGuGCGCCGCc -3'
miRNA:   3'- -UGUGGa--UG-UGGUUCUa-----GC-CGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 35770 0.68 0.793278
Target:  5'- gACGCCcgaccCACCGAGGcucUCGGC-CCGCc -3'
miRNA:   3'- -UGUGGau---GUGGUUCU---AGCCGcGGCGc -5'
29391 3' -56.6 NC_006151.1 + 105406 0.68 0.802263
Target:  5'- cGCGCCUGCccGCCAAGuUCGuGgGgCGCa -3'
miRNA:   3'- -UGUGGAUG--UGGUUCuAGC-CgCgGCGc -5'
29391 3' -56.6 NC_006151.1 + 99227 0.68 0.802263
Target:  5'- aGCGCCU-CGCCGcugcAGGUCguggaGGCGCuCGUGa -3'
miRNA:   3'- -UGUGGAuGUGGU----UCUAG-----CCGCG-GCGC- -5'
29391 3' -56.6 NC_006151.1 + 81390 0.68 0.802263
Target:  5'- cGCGCCgcgGCGCCcAGGUUGGCcaggGUgGCGu -3'
miRNA:   3'- -UGUGGa--UGUGGuUCUAGCCG----CGgCGC- -5'
29391 3' -56.6 NC_006151.1 + 58196 0.68 0.802263
Target:  5'- cACGCCgugggcCACCAGGcaGUCGaaGCCGCGc -3'
miRNA:   3'- -UGUGGau----GUGGUUC--UAGCcgCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 39568 0.68 0.802263
Target:  5'- cCGCCUGCACCccGGGGcCGaGCcGCUGCGc -3'
miRNA:   3'- uGUGGAUGUGG--UUCUaGC-CG-CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 100622 0.68 0.793278
Target:  5'- cGCGCUgGgACCu-GGUCaGCGCCGCGc -3'
miRNA:   3'- -UGUGGaUgUGGuuCUAGcCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 20756 0.68 0.793278
Target:  5'- cGCGCCUcCACCGcggcGGA-CGcGCGCCGgGc -3'
miRNA:   3'- -UGUGGAuGUGGU----UCUaGC-CGCGGCgC- -5'
29391 3' -56.6 NC_006151.1 + 113029 0.68 0.793278
Target:  5'- gACGCgUGCGCCGGGugcuGCGCgGCGg -3'
miRNA:   3'- -UGUGgAUGUGGUUCuagcCGCGgCGC- -5'
29391 3' -56.6 NC_006151.1 + 63771 0.68 0.793278
Target:  5'- gGCGCCcccgcguCGCCAggcgGGGUCGGCcGUCGCc -3'
miRNA:   3'- -UGUGGau-----GUGGU----UCUAGCCG-CGGCGc -5'
29391 3' -56.6 NC_006151.1 + 24940 0.68 0.793278
Target:  5'- aGCACCUcgaACCcAGGUCcgugacgauGcGCGCCGCGg -3'
miRNA:   3'- -UGUGGAug-UGGuUCUAG---------C-CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 106662 0.68 0.793278
Target:  5'- cGCACgUGCGCgAGGccgCGGCGCUcgGCGc -3'
miRNA:   3'- -UGUGgAUGUGgUUCua-GCCGCGG--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.